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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3otx AP5 Adenosine kinase, putative

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3otx AP5Adenosine kinase, putative / 1.456
4dc3 2FAPutative adenosine kinase / 0.797
3uq9 TBNPutative adenosine kinase / 0.781
2i6a 5I5Adenosine kinase 2.7.1.20 0.780
3vas ADNPutative adenosine kinase / 0.772
3uq6 ADNPutative adenosine kinase / 0.766
2ab8 ACPAdenosine kinase 2.7.1.20 0.730
2ab8 MTPAdenosine kinase 2.7.1.20 0.711
3vaq ADNPutative adenosine kinase / 0.706
4o1g AGSAdenosine kinase 2.7.1.20 0.703
2aa0 MTPAdenosine kinase 2.7.1.20 0.688
4s1h ADPPyridoxal kinase, putative / 0.686
2a9y 26AAdenosine kinase 2.7.1.20 0.684
4ube 2FAAdenosine kinase 2.7.1.20 0.682
2ejz SAHDiphthine synthase / 0.671
2pkm ADNAdenosine kinase 2.7.1.20 0.666
4oau ADP2-5A-dependent ribonuclease 3.1.26 0.661
3uqd ATPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 0.660
3zxs FADDeoxyribodipyrimidine photolyase-related protein / 0.657
2z08 ATPUniversal stress protein family / 0.656
1mjh ATPUniversal stress protein MJ0577 / 0.654
2klh 5GP2'-deoxynucleoside 5'-phosphate N-hydrolase 1 / 0.654
3umo ATPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 0.653
3wnz ADPAlanine--anticapsin ligase / 0.653
4jzy FADCryptochrome-1 / 0.650