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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3opd HIE Heat shock protein 83

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3opd HIEHeat shock protein 83 / 1.409
3q5k D1UHeat shock protein 83-1 / 1.054
4nh8 2LCHeat shock protein HSP 90-alpha / 0.915
4nh9 2LCEndoplasmin / 0.862
3mnr SD1Heat shock protein HSP 90-alpha / 0.845
4hy6 FJ1Heat shock protein HSP 90-alpha / 0.752
3d0b SNXHeat shock protein HSP 90-alpha / 0.710
4awp 99AHeat shock protein HSP 90-alpha / 0.673