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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ojl NAD Cap5O

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ojl NADCap5O / 0.977
3f3s NADLambda-crystallin homolog / 0.692
3hja NADGlyceraldehyde-3-phosphate dehydrogenase / 0.677
3oet NADErythronate-4-phosphate dehydrogenase / 0.664
1gd1 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.660
1hdg NADGlyceraldehyde-3-phosphate dehydrogenase / 0.660
4om8 NAD3-hydroxybutyryl-coA dehydrogenase / 0.659
1znq NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.655
3m2t NADProbable dehydrogenase / 0.655
1u8f NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.652
3keq NADRedox-sensing transcriptional repressor Rex / 0.652
1szj NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.651
4xrg NADHomospermidine synthase 2.5.1.44 0.651
3ids NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.650