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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3oix FMN Dihydroorotate dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3oix FMNDihydroorotate dehydrogenase / 1.135
1jue FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.981
1jub FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.979
1dor FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.956
4ef9 FMNDihydroorotate dehydrogenase (fumarate) / 0.948
2bsl FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.946
2djl FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.932
4ef8 FMNDihydroorotate dehydrogenase (fumarate) / 0.932
4wzh FMNDihydroorotate dehydrogenase (fumarate) / 0.918
3gye FMNDihydroorotate dehydrogenase (fumarate) / 0.880
2djx FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.878
3c3n FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.806
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.791
4m5p FMNNADPH dehydrogenase / 0.781
3tjl FMNNADPH dehydrogenase / 0.778
4jic FMNGTN Reductase / 0.773
3p84 FMNPentaerythritol tetranitrate reductase / 0.765
4uth FMNXenobiotic reductase / 0.758
1ep3 FMNDihydroorotate dehydrogenase B (NAD(+)), catalytic subunit 1.3.1.14 0.748
4awt FMNNADH:flavin oxidoreductase Sye1 / 0.748
4df2 FMNNADPH dehydrogenase / 0.748
4utm FNRXenobiotic reductase / 0.748
3l67 FMNXenobiotic reductase / 0.746
1z48 FMNNADPH dehydrogenase / 0.739
1vji FMN12-oxophytodienoate reductase 1 1.3.1.42 0.738
3gr8 FMNNADPH dehydrogenase / 0.738
3hf3 FMNChromate reductase / 0.738
2zru FMNIsopentenyl-diphosphate delta-isomerase / 0.734
3l5l FMNXenobiotic reductase / 0.729
3p8j FMNPentaerythritol tetranitrate reductase / 0.729
1h50 FMNPentaerythritol tetranitrate reductase / 0.728
3n14 FMNXenobiotic reductase / 0.726
2zrz FNRIsopentenyl-diphosphate delta-isomerase / 0.720
4ycp FMNtRNA-dihydrouridine(16) synthase / 0.720
1oyc FMNNADPH dehydrogenase 1 1.6.99.1 0.719
1uum FMNDihydroorotate dehydrogenase (quinone), mitochondrial 1.3.5.2 0.716
1ofd FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.714
3p67 FMNPentaerythritol tetranitrate reductase / 0.714
4b5n FMNNAD(P)H:flavin oxidoreductase Sye4 / 0.714
1vyr FMNPentaerythritol tetranitrate reductase / 0.712
1gwj FMNMorphinone reductase / 0.711
1z41 FMNNADPH dehydrogenase / 0.709
3p8i FMNPentaerythritol tetranitrate reductase / 0.709
1h63 FMNPentaerythritol tetranitrate reductase / 0.708
2z6i FMN2-nitropropane dioxygenase / 0.707
1icq FMN12-oxophytodienoate reductase 1 1.3.1.42 0.706
2abb FMNPentaerythritol tetranitrate reductase / 0.706
4e2b FMNDehydrogenase / 0.702
2zrx FMNIsopentenyl-diphosphate delta-isomerase / 0.701
3b05 FNRIsopentenyl-diphosphate delta-isomerase / 0.701
4iql FMNEnoyl-(Acyl-carrier-protein) reductase II / 0.701
3f03 FMNPentaerythritol tetranitrate reductase / 0.699
3p74 FMNPentaerythritol tetranitrate reductase / 0.698
3gka FMNN-ethylmaleimide reductase / 0.697
1h51 FMNPentaerythritol tetranitrate reductase / 0.694
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.692
4utl FNRXenobiotic reductase / 0.692
1ofe FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.691
4tmc FMNOld yellow enzyme / 0.687
1ep1 FMNDihydroorotate dehydrogenase B (NAD(+)), catalytic subunit 1.3.1.14 0.685
3kru FMNNADH:flavin oxidoreductase/NADH oxidase / 0.684
3p62 FMNPentaerythritol tetranitrate reductase / 0.682
3hgs FMN12-oxophytodienoate reductase 3 1.3.1.42 0.681
3p82 FMNPentaerythritol tetranitrate reductase / 0.680
1oya FMNNADPH dehydrogenase 1 1.6.99.1 0.678
4h6k FMNNADPH dehydrogenase 1 1.6.99.1 0.678
4k7y FMNNADPH dehydrogenase 1 1.6.99.1 0.678
4rnx FMNNADPH dehydrogenase 1 1.6.99.1 0.678
4yco FMNtRNA-dihydrouridine(16) synthase / 0.677
4qai FMNNADPH dehydrogenase / 0.675
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.675
5ebu FMNLactate oxidase / 0.675
1bwk FMNNADPH dehydrogenase 1 1.6.99.1 0.670
2rhg IGPTryptophan synthase alpha chain / 0.669
4e2d FMNDehydrogenase / 0.669
1llw FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.667
2zrv FNRIsopentenyl-diphosphate delta-isomerase / 0.667
4xq6 FMNDihydroorotate dehydrogenase (quinone) / 0.667
1q45 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.665
2gjn FMNNitronate monooxygenase 1.13.12.16 0.664
4cw5 FMNDfnA / 0.663
1qoq IGPTryptophan synthase alpha chain / 0.662
4bf9 FMNtRNA-dihydrouridine(16) synthase / 0.662
2hs8 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.661
4utk FNRXenobiotic reductase / 0.661
1ofv FMNFlavodoxin / 0.660
1djq FMNTrimethylamine dehydrogenase 1.5.8.2 0.659
3vkj FNRIsopentenyl-diphosphate delta-isomerase / 0.659
5cpm FNRNADH:flavin oxidoreductase / 0.658
1bwl FMNNADPH dehydrogenase 1 1.6.99.1 0.655
3aty FMNProstaglandin F2a synthase / 0.652
1kfb IGPTryptophan synthase alpha chain / 0.651
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.651