sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3oiw | GNP | GTPase HRas |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3oiw | GNP | GTPase HRas | / | 1.241 | |
| 3rs0 | GNP | GTPase HRas | / | 1.220 | |
| 4l9w | GNP | GTPase HRas | / | 1.219 | |
| 3oiv | GNP | GTPase HRas | / | 1.217 | |
| 3rsl | GNP | GTPase HRas | / | 1.217 | |
| 3lbn | GNP | GTPase HRas | / | 1.216 | |
| 3l8y | GNP | GTPase HRas | / | 1.215 | |
| 3rs7 | GNP | GTPase HRas | / | 1.201 | |
| 3i3s | GNP | GTPase HRas | / | 1.200 | |
| 3k8y | GNP | GTPase HRas | / | 1.200 | |
| 3lbi | GNP | GTPase HRas | / | 1.197 | |
| 3rs4 | GNP | GTPase HRas | / | 1.196 | |
| 3rs5 | GNP | GTPase HRas | / | 1.196 | |
| 4dlz | GNP | GTPase HRas | / | 1.195 | |
| 4dlx | GNP | GTPase HRas | / | 1.194 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.185 | |
| 4dlt | GNP | GTPase HRas | / | 1.181 | |
| 4dlv | GNP | GTPase HRas | / | 1.181 | |
| 2c5l | GTP | GTPase HRas | / | 1.179 | |
| 2rgc | GNP | GTPase HRas | / | 1.176 | |
| 2rge | GNP | GTPase HRas | / | 1.166 | |
| 4dlw | GNP | GTPase HRas | / | 1.165 | |
| 5b2z | GNP | GTPase HRas | / | 1.165 | |
| 3lbh | GNP | GTPase HRas | / | 1.164 | |
| 3v4f | GNP | GTPase HRas | / | 1.164 | |
| 3oiu | GNP | GTPase HRas | / | 1.149 | |
| 4g0n | GNP | GTPase HRas | / | 1.149 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.147 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 1.147 | |
| 3ddc | GNP | GTPase HRas | / | 1.146 | |
| 4k81 | GTP | GTPase HRas | / | 1.136 | |
| 4dsn | GCP | GTPase KRas | / | 1.135 | |
| 4nyj | GNP | GTPase HRas | / | 1.129 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.127 | |
| 2rgb | GNP | GTPase HRas | / | 1.126 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.120 | |
| 4dls | GNP | GTPase HRas | / | 1.118 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.105 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.104 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.102 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 1.100 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.098 | |
| 3k9l | GNP | GTPase HRas | / | 1.098 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.095 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.092 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.088 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.084 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 1.082 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.081 | |
| 4nyi | GNP | GTPase HRas | / | 1.080 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.079 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 1.069 | |
| 2rgg | GNP | GTPase HRas | / | 1.067 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 1.057 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 1.055 | |
| 3oes | GNP | GTPase RhebL1 | / | 1.055 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.047 | |
| 3tgp | GNP | GTPase HRas | / | 1.046 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 1.044 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 1.044 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 1.032 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 1.031 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 1.031 | |
| 1kmq | GNP | Transforming protein RhoA | / | 1.020 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 1.020 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 1.016 | |
| 4xvq | GNP | GTPase HRas | / | 1.010 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 1.009 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 1.007 | |
| 1s1c | GNP | Transforming protein RhoA | / | 1.006 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 1.000 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.995 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.994 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.991 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.991 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.990 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.989 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.987 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.984 | |
| 3kud | GDP | GTPase HRas | / | 0.983 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.980 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.980 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.975 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.975 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.971 | |
| 2ce2 | GDP | GTPase HRas | / | 0.965 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.963 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.963 | |
| 4ql3 | GDP | GTPase KRas | / | 0.963 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 0.959 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.959 | |
| 1lfd | GNP | GTPase HRas | / | 0.958 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.957 | |
| 4l9s | GDP | GTPase HRas | / | 0.953 | |
| 4dso | GSP | GTPase KRas | / | 0.951 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.949 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.948 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.946 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.943 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.942 | |
| 2cl6 | CAG | GTPase HRas | / | 0.939 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.938 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.935 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.935 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.935 | |
| 4wa7 | GDP | GTPase KRas | / | 0.934 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.933 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.933 | |
| 4mit | GTP | Rho-related protein racC | / | 0.932 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.932 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.931 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.929 | |
| 4q02 | GDP | GTPase KRas | / | 0.928 | |
| 4tq9 | GDP | GTPase KRas | / | 0.928 | |
| 4lv6 | GDP | GTPase KRas | / | 0.926 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.925 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.924 | |
| 4epx | GDP | GTPase KRas | / | 0.924 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.923 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.922 | |
| 4l8g | GDP | GTPase KRas | / | 0.921 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.918 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.917 | |
| 4q03 | GDP | GTPase KRas | / | 0.915 | |
| 4xvr | GNP | GTPase HRas | / | 0.915 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.913 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.912 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.911 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.909 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.908 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.907 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.903 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.902 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.901 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.899 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.898 | |
| 4epw | GDP | GTPase KRas | / | 0.897 | |
| 4ldj | GDP | GTPase KRas | / | 0.895 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.893 | |
| 4dsu | GDP | GTPase KRas | / | 0.892 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.889 | |
| 4dvg | GSP | Rho family GTPase | / | 0.888 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.886 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.884 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.884 | |
| 4obe | GDP | GTPase KRas | / | 0.879 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.878 | |
| 3r9x | GNP | GTPase Era | / | 0.878 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.878 | |
| 4lpk | GDP | GTPase KRas | / | 0.876 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.875 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.873 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.872 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.872 | |
| 4luc | GDP | GTPase KRas | / | 0.864 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.862 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.862 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.862 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.862 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.862 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.858 | |
| 3ftq | GNP | Septin-2 | / | 0.858 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.857 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.856 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.856 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.855 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.854 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.854 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.854 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.854 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.845 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.845 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.844 | |
| 4lrw | GDP | GTPase KRas | / | 0.844 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.841 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.839 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.839 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.838 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.838 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.837 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.837 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.832 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.831 | |
| 3ref | GDP | Rho family GTPase | / | 0.830 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.827 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.826 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.826 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.826 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.825 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.824 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.824 | |
| 4db1 | ANP | Myosin-7 | / | 0.824 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.824 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.822 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.819 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.819 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.817 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.816 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.815 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.815 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.814 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.813 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.813 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.813 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.813 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.810 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.808 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.806 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.806 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.804 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.803 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.802 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.801 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.801 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.801 | |
| 5bn3 | ADP | NEQ263 | / | 0.801 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.800 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.800 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.794 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.793 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.793 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.791 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.788 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.787 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.787 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.787 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.781 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.781 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.779 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.779 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.779 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.777 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.773 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.773 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.772 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.772 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.772 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.772 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.772 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.770 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.770 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.768 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.767 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.766 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.766 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.766 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.765 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.765 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.764 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.764 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.762 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.762 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.762 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.762 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.762 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.760 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.759 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.758 | |
| 2fna | ADP | Uncharacterized protein | / | 0.756 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.756 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.756 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.756 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.755 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.755 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.755 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.755 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.755 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.755 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.754 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.752 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.752 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.752 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.752 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.752 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.751 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.751 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.749 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.749 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.747 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.747 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.746 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.746 | |
| 1esn | ANP | Pantothenate kinase | 2.7.1.33 | 0.745 | |
| 5cyo | GDP | Septin-9 | / | 0.743 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.741 | |
| 4yqf | GDP | Septin-9 | / | 0.741 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.740 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.738 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.737 | |
| 4ike | ADP | Adenylate kinase | / | 0.737 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.737 | |
| 4v02 | ATP | Site-determining protein | / | 0.737 | |
| 1xms | ANP | Protein RecA | / | 0.736 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.736 | |
| 4jky | ADP | Adenylate kinase | / | 0.736 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.735 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.735 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.735 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.735 | |
| 4jld | ADP | Adenylate kinase | / | 0.735 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.734 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.734 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.733 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.733 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.733 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.732 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.731 | |
| 1yhn | GTP | Ras-related protein Rab-7a | / | 0.730 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.729 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.727 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.727 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.726 | |
| 3hpr | AP5 | Adenylate kinase | / | 0.726 | |
| 1xmv | ADP | Protein RecA | / | 0.725 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.725 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.725 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.724 | |
| 2zts | ADP | Uncharacterized protein | / | 0.724 | |
| 3hpq | AP5 | Adenylate kinase | / | 0.724 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.724 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.723 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.721 | |
| 2vor | ACP | Folylpolyglutamate synthase | / | 0.720 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.720 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.720 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.719 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.719 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.719 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.719 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.719 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.719 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.718 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.718 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.717 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.717 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.717 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.716 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.716 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.716 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.715 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.714 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.714 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.714 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.714 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.714 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.714 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.713 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.713 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.713 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.712 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.712 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.712 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.710 | |
| 4jlo | ADP | Adenylate kinase | / | 0.709 | |
| 4x8l | AP5 | Adenylate kinase | / | 0.709 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.708 | |
| 2eck | ADP | Adenylate kinase | / | 0.708 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.708 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.707 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.707 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.707 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.706 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.706 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.706 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.705 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.704 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.704 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.703 | |
| 4c30 | ANP | DNA helicase | / | 0.703 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.702 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.701 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.698 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.698 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.698 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.698 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.698 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.698 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.697 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.697 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.697 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.697 | |
| 1ank | ANP | Adenylate kinase | / | 0.696 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.696 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.696 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.695 | |
| 3ea0 | ATP | ATPase, ParA family | / | 0.694 | |
| 2o8b | ADP | DNA mismatch repair protein Msh2 | / | 0.693 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.693 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.692 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.692 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.691 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.691 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.690 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.690 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.689 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.688 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.688 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.688 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.685 | |
| 1svl | ADP | Large T antigen | 3.6.4 | 0.684 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.684 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.683 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.683 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.683 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.682 | |
| 1oe0 | TTP | Deoxynucleoside kinase | / | 0.681 | |
| 1xbt | TTP | Thymidine kinase, cytosolic | 2.7.1.21 | 0.681 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.680 | |
| 2ad5 | ADP | CTP synthase | / | 0.680 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.680 | |
| 2fgk | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.679 | |
| 2zrj | AGS | Protein RecA | / | 0.679 | |
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.679 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.678 | |
| 4pl0 | ANP | Microcin-J25 export ATP-binding/permease protein McjD | / | 0.678 | |
| 2fgj | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.677 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.677 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.675 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.675 | |
| 1njf | AGS | DNA polymerase III subunit tau | 2.7.7.7 | 0.672 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.672 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.672 | |
| 4d81 | ADP | AAA ATPase, central domain protein | / | 0.672 | |
| 4lja | ACP | Chaperone protein ClpB | / | 0.671 | |
| 2ax4 | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 | 2.7.1.25 | 0.670 | |
| 2oap | ANP | Type II secretion system protein (GspE-2) | / | 0.670 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.670 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.669 | |
| 2x19 | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.669 | |
| 1mez | GDP | Adenylosuccinate synthetase isozyme 1 | / | 0.668 | |
| 1nly | AGS | Cag alpha | / | 0.668 | |
| 5dac | AGS | Uncharacterized protein | / | 0.667 | |
| 2dr3 | ADP | UPF0273 protein PH0284 | / | 0.666 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.666 | |
| 1ht2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.665 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.665 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.664 | |
| 4ma4 | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.662 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.661 | |
| 1zm7 | TTP | Deoxynucleoside kinase | / | 0.661 | |
| 3t7o | UPG | Glycogenin-1 | 2.4.1.186 | 0.661 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.660 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.659 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.659 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.659 | |
| 4iij | GTP | Tubulin alpha-1B chain | / | 0.657 | |
| 2c9o | ADP | RuvB-like 1 | 3.6.4.12 | 0.656 | |
| 4c2u | ANP | DNA helicase | / | 0.656 | |
| 1k6m | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 | 2.7.1.105 | 0.654 | |
| 3pfi | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.654 | |
| 4lj9 | ACP | Chaperone protein ClpB | / | 0.654 | |
| 4xvu | ATP | ATPase GET3 | / | 0.654 | |
| 5fm6 | ADP | RuvB-like helicase | / | 0.654 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.653 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.652 | |
| 1dvr | ATF | Adenylate kinase | / | 0.651 | |
| 4cvm | ANP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.651 | |
| 4ww0 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.651 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.650 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.650 |