sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3oiu | GNP | GTPase HRas |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3oiu | GNP | GTPase HRas | / | 1.191 | |
| 3v4f | GNP | GTPase HRas | / | 1.187 | |
| 4dlt | GNP | GTPase HRas | / | 1.187 | |
| 3rs5 | GNP | GTPase HRas | / | 1.186 | |
| 4dlv | GNP | GTPase HRas | / | 1.186 | |
| 3rs4 | GNP | GTPase HRas | / | 1.185 | |
| 3rs7 | GNP | GTPase HRas | / | 1.185 | |
| 4dlw | GNP | GTPase HRas | / | 1.184 | |
| 4dlz | GNP | GTPase HRas | / | 1.184 | |
| 5b2z | GNP | GTPase HRas | / | 1.184 | |
| 2rgc | GNP | GTPase HRas | / | 1.183 | |
| 4dlx | GNP | GTPase HRas | / | 1.182 | |
| 2rgb | GNP | GTPase HRas | / | 1.168 | |
| 3lbi | GNP | GTPase HRas | / | 1.168 | |
| 3rsl | GNP | GTPase HRas | / | 1.167 | |
| 3rs0 | GNP | GTPase HRas | / | 1.166 | |
| 4dls | GNP | GTPase HRas | / | 1.165 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.165 | |
| 4l9w | GNP | GTPase HRas | / | 1.165 | |
| 3l8y | GNP | GTPase HRas | / | 1.164 | |
| 3lbn | GNP | GTPase HRas | / | 1.164 | |
| 3k8y | GNP | GTPase HRas | / | 1.163 | |
| 3oiw | GNP | GTPase HRas | / | 1.149 | |
| 3i3s | GNP | GTPase HRas | / | 1.148 | |
| 2rge | GNP | GTPase HRas | / | 1.147 | |
| 3oiv | GNP | GTPase HRas | / | 1.147 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.145 | |
| 3lbh | GNP | GTPase HRas | / | 1.135 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.126 | |
| 2c5l | GTP | GTPase HRas | / | 1.123 | |
| 3ddc | GNP | GTPase HRas | / | 1.123 | |
| 4nyj | GNP | GTPase HRas | / | 1.112 | |
| 4nyi | GNP | GTPase HRas | / | 1.111 | |
| 4dsn | GCP | GTPase KRas | / | 1.097 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.079 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.067 | |
| 4k81 | GTP | GTPase HRas | / | 1.066 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.060 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.055 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 1.054 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.053 | |
| 2rgg | GNP | GTPase HRas | / | 1.049 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.045 | |
| 4dso | GSP | GTPase KRas | / | 1.040 | |
| 4g0n | GNP | GTPase HRas | / | 1.038 | |
| 1kmq | GNP | Transforming protein RhoA | / | 1.036 | |
| 3k9l | GNP | GTPase HRas | / | 1.035 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 1.032 | |
| 3oes | GNP | GTPase RhebL1 | / | 1.031 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 1.030 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.028 | |
| 3tgp | GNP | GTPase HRas | / | 1.028 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 1.027 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.026 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.025 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 1.021 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.021 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 1.020 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 1.011 | |
| 4xvq | GNP | GTPase HRas | / | 1.011 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 1.008 | |
| 4mit | GTP | Rho-related protein racC | / | 1.008 | |
| 4xvr | GNP | GTPase HRas | / | 1.007 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 1.006 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 1.006 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 1.001 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 0.998 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.996 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.991 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.990 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 0.986 | |
| 3kud | GDP | GTPase HRas | / | 0.983 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.981 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.978 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 0.978 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.973 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.968 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.967 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.964 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.962 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.961 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 0.961 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.954 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.954 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.951 | |
| 4ql3 | GDP | GTPase KRas | / | 0.951 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 0.947 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.947 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.945 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.944 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.943 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.940 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.940 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.940 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.940 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.939 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.937 | |
| 4l9s | GDP | GTPase HRas | / | 0.937 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.937 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.935 | |
| 2ce2 | GDP | GTPase HRas | / | 0.934 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.934 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.934 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.933 | |
| 4wa7 | GDP | GTPase KRas | / | 0.932 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.931 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.929 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.929 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.927 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.927 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.925 | |
| 3r9x | GNP | GTPase Era | / | 0.925 | |
| 1lfd | GNP | GTPase HRas | / | 0.923 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.923 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.921 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.918 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.917 | |
| 4q03 | GDP | GTPase KRas | / | 0.917 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.916 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.916 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.915 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.915 | |
| 4q02 | GDP | GTPase KRas | / | 0.914 | |
| 4epx | GDP | GTPase KRas | / | 0.911 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.909 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.908 | |
| 4dvg | GSP | Rho family GTPase | / | 0.907 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.905 | |
| 4l8g | GDP | GTPase KRas | / | 0.904 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.902 | |
| 4dsu | GDP | GTPase KRas | / | 0.902 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.901 | |
| 4tq9 | GDP | GTPase KRas | / | 0.900 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.898 | |
| 4ldj | GDP | GTPase KRas | / | 0.896 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.894 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.891 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.888 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.887 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.887 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.886 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.886 | |
| 4epw | GDP | GTPase KRas | / | 0.885 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.884 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.880 | |
| 4obe | GDP | GTPase KRas | / | 0.880 | |
| 2cl6 | CAG | GTPase HRas | / | 0.879 | |
| 4lrw | GDP | GTPase KRas | / | 0.879 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.878 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.875 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.875 | |
| 4lv6 | GDP | GTPase KRas | / | 0.871 | |
| 4lpk | GDP | GTPase KRas | / | 0.868 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.867 | |
| 4luc | GDP | GTPase KRas | / | 0.866 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.865 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.864 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.862 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.859 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.858 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.857 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.857 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.855 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.854 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.850 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.850 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.850 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.847 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.846 | |
| 3ftq | GNP | Septin-2 | / | 0.846 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.845 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.842 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.841 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.839 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.839 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.838 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.832 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.829 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.829 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.829 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.828 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.828 | |
| 3ref | GDP | Rho family GTPase | / | 0.828 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.827 | |
| 4db1 | ANP | Myosin-7 | / | 0.827 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.824 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.823 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.819 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.818 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.818 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.818 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.818 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.816 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.815 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.815 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.814 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.813 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.813 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.811 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.811 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.810 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.808 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.808 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.808 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.807 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.805 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.805 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.804 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.800 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.799 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.796 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.794 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.794 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.789 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.787 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.786 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.781 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.780 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.780 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.780 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.779 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.778 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.777 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.775 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.775 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.775 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.775 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.774 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.773 | |
| 1ank | ANP | Adenylate kinase | / | 0.772 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.772 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.772 | |
| 2fna | ADP | Uncharacterized protein | / | 0.772 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.772 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.771 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.771 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.770 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.769 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.769 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.768 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.767 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.767 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.766 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.765 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.765 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.765 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.763 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.763 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.763 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.762 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.762 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.762 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.762 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.761 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.759 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.758 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.758 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.758 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.758 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.757 | |
| 5bn3 | ADP | NEQ263 | / | 0.757 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.756 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.756 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.755 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.754 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.754 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.754 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.753 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.753 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.753 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.753 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.752 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.751 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.751 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.751 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.751 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.750 | |
| 4ihq | ADP | Conserved Archaeal protein | / | 0.747 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.745 | |
| 5cyo | GDP | Septin-9 | / | 0.745 | |
| 1esn | ANP | Pantothenate kinase | 2.7.1.33 | 0.744 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.743 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.743 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.742 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.741 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.740 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.740 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.739 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.739 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.739 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.739 | |
| 1xms | ANP | Protein RecA | / | 0.738 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.737 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.737 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.736 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.736 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.736 | |
| 1gqy | ACP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.735 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.735 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.735 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.735 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.735 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.735 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.734 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.733 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.731 | |
| 3hpq | AP5 | Adenylate kinase | / | 0.730 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.729 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.729 | |
| 1xmv | ADP | Protein RecA | / | 0.728 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.728 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.728 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.727 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.726 | |
| 2zts | ADP | Uncharacterized protein | / | 0.726 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.725 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.725 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.725 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.723 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.723 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.723 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.723 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.722 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.722 | |
| 4ike | ADP | Adenylate kinase | / | 0.722 | |
| 4v02 | ATP | Site-determining protein | / | 0.722 | |
| 2vor | ACP | Folylpolyglutamate synthase | / | 0.721 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.721 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.721 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.721 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.720 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.720 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.719 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.719 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.719 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.719 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.719 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.719 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.718 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.718 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.718 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.718 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.718 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.718 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.718 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.716 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.716 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.716 | |
| 4c30 | ANP | DNA helicase | / | 0.716 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.716 | |
| 4yqf | GDP | Septin-9 | / | 0.716 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.715 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.715 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.714 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.713 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.710 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.710 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.710 | |
| 5ftc | ADP | TPR domain protein | / | 0.710 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.709 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.709 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.708 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.708 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.707 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.706 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.705 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.704 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.703 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.703 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.702 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.702 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.701 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.700 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.699 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.699 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.699 | |
| 4ma4 | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.699 | |
| 1bif | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.698 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.698 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.698 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.698 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.698 | |
| 4jlo | ADP | Adenylate kinase | / | 0.698 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.697 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.696 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.696 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.696 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.696 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.695 | |
| 4ww0 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.695 | |
| 4x8l | AP5 | Adenylate kinase | / | 0.695 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.694 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.694 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.694 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.693 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.693 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.693 | |
| 4iok | ADP | Formate--tetrahydrofolate ligase | / | 0.693 | |
| 2fgk | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.691 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.690 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.690 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.686 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.686 | |
| 1oe0 | TTP | Deoxynucleoside kinase | / | 0.685 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.684 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.684 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.684 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.684 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.684 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.684 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.684 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.684 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.684 | |
| 2vp0 | TTP | Deoxynucleoside kinase | / | 0.684 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.683 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.682 | |
| 2zrj | AGS | Protein RecA | / | 0.680 | |
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.680 | |
| 4zir | ANP | Energy-coupling factor transporter ATP-binding protein EcfA2 | 3.6.3 | 0.680 | |
| 4zir | ANP | Energy-coupling factor transporter ATP-binding protein EcfA1 | / | 0.680 | |
| 2c9o | ADP | RuvB-like 1 | 3.6.4.12 | 0.679 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.678 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.676 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.676 | |
| 5dac | AGS | Uncharacterized protein | / | 0.676 | |
| 1njf | AGS | DNA polymerase III subunit tau | 2.7.7.7 | 0.675 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.675 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.675 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.675 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.674 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.673 | |
| 4o4i | GTP | Tubulin alpha-1B chain | / | 0.673 | |
| 2ax4 | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 | 2.7.1.25 | 0.672 | |
| 2fgj | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.672 | |
| 2oap | ANP | Type II secretion system protein (GspE-2) | / | 0.672 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.672 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.672 | |
| 4ww4 | ADP | RuvB-like helicase | / | 0.672 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.672 | |
| 3fvq | ATP | Fe(3+) ions import ATP-binding protein FbpC | / | 0.671 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.670 | |
| 4i1v | ADP | Dephospho-CoA kinase | / | 0.670 | |
| 1e1q | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.669 | |
| 1e1q | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.669 | |
| 1mez | GDP | Adenylosuccinate synthetase isozyme 1 | / | 0.669 | |
| 1nly | AGS | Cag alpha | / | 0.668 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.666 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.665 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.665 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.665 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.664 | |
| 2o8b | ADP | DNA mismatch repair protein Msh2 | / | 0.664 | |
| 1zm7 | TTP | Deoxynucleoside kinase | / | 0.663 | |
| 5itz | GTP | Tubulin alpha-1B chain | / | 0.662 | |
| 1ake | AP5 | Adenylate kinase | / | 0.661 | |
| 2eck | ADP | Adenylate kinase | / | 0.661 | |
| 2r6g | ATP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.661 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.661 | |
| 4qbi | AP5 | Adenylate kinase | / | 0.660 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.659 | |
| 4rz3 | ADP | Site-determining protein | / | 0.659 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.659 | |
| 4be7 | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.658 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.657 | |
| 4e2x | TYD | Methyltransferase | / | 0.656 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.656 | |
| 4iei | ADP | Gene 2 protein | / | 0.655 | |
| 4cvm | ANP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.652 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.651 | |
| 4c2u | ANP | DNA helicase | / | 0.651 | |
| 1sxj | AGS | Replication factor C subunit 1 | / | 0.650 | |
| 4wbn | GTP | Tubulin alpha-1B chain | / | 0.650 |