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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3oho Z79 Stromelysin-1 3.4.24.17

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3oho Z79Stromelysin-1 3.4.24.17 0.945
4g9l NGHStromelysin-1 3.4.24.17 0.859
1d8m BBHStromelysin-1 3.4.24.17 0.855
1g05 BBHStromelysin-1 3.4.24.17 0.830
2w0d CGSMacrophage metalloelastase 3.4.24.65 0.826
1g49 111Stromelysin-1 3.4.24.17 0.795
1d8f SPIStromelysin-1 3.4.24.17 0.792
4ja1 NGHStromelysin-1 3.4.24.17 0.787
4h76 10BMacrophage metalloelastase 3.4.24.65 0.774
4dpe NGHStromelysin-1 3.4.24.17 0.773
1d7x SPCStromelysin-1 3.4.24.17 0.753
2ow1 7MRMatrix metalloproteinase-9 3.4.24.35 0.744
1b3d S27Stromelysin-1 3.4.24.17 0.743
2ow2 8MRMatrix metalloproteinase-9 3.4.24.35 0.708
1bqo N25Stromelysin-1 3.4.24.17 0.700
1q3a NGHStromelysin-2 3.4.24.22 0.699
2jsd NGHMatrix metalloproteinase-20 3.4.24 0.697
4h49 L29Macrophage metalloelastase 3.4.24.65 0.690
1d5j MM3Stromelysin-1 3.4.24.17 0.685
4guy KLJMacrophage metalloelastase 3.4.24.65 0.682
3o2x 3O2Collagenase 3 3.4.24 0.680
4h1q 0XXMatrix metalloproteinase-9 3.4.24.35 0.680
1ciz DPSStromelysin-1 3.4.24.17 0.673
1zxc IH6Disintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.673
1you PFDCollagenase 3 3.4.24 0.667
3zxh E41Collagenase 3 3.4.24 0.667
2d1o FA4Stromelysin-1 3.4.24.17 0.665
2i47 KGYDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.665
3kry 3KRCollagenase 3 3.4.24 0.662
1bzs BSINeutrophil collagenase 3.4.24.34 0.661
1jk3 BATMacrophage metalloelastase 3.4.24.65 0.660
1yqy 915Lethal factor 3.4.24.83 0.660
2a8h 4NHDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.655
2woa 576Macrophage metalloelastase 3.4.24.65 0.654