Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3oap REA Retinoic acid receptor RXR-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3oap REARetinoic acid receptor RXR-alpha / 1.069
1fm9 9CRRetinoic acid receptor RXR-alpha / 0.863
1k74 9CRRetinoic acid receptor RXR-alpha / 0.848
4m8h R4MRetinoic acid receptor RXR-alpha / 0.810
3uvv REARetinoic acid receptor RXR-alpha / 0.800
1fm6 9CRRetinoic acid receptor RXR-alpha / 0.780
2acl REARetinoic acid receptor RXR-alpha / 0.729
1fby REARetinoic acid receptor RXR-alpha / 0.722
4k4j 1O8Retinoic acid receptor RXR-alpha / 0.692
1rdt L79Retinoic acid receptor RXR-alpha / 0.670
1mvc BM6Retinoic acid receptor RXR-alpha / 0.664
1drt PCVClavaminate synthase 1 1.14.11.21 0.654