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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3o9l LPN Renin 3.4.23.15

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3o9l LPNRenin 3.4.23.15 1.397
3g6z A7TRenin 3.4.23.15 0.860
3g72 A6TRenin 3.4.23.15 0.833
3oad LPORenin 3.4.23.15 0.829
3oag LPQRenin 3.4.23.15 0.820
3k1w BFXRenin 3.4.23.15 0.708
2g27 4LGRenin 3.4.23.15 0.688
3vyf VYFRenin 3.4.23.15 0.677
3ufl 508Beta-secretase 1 3.4.23.46 0.660