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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3o26 NDP Salutaridine reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
3o26 NDPSalutaridine reductase / 1.321
1n5d NDPCarbonyl reductase [NADPH] 1 / 1.069
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 1.053
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 1.035
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 1.006
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.945
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.941
4j7u NAPSepiapterin reductase 1.1.1.153 0.937
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.933
3p19 NDPPutative blue fluorescent protein / 0.931
1sny NAPLD36273p / 0.922
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.917
4kwh NAPReductase homolog / 0.912
4hwk NAPSepiapterin reductase 1.1.1.153 0.909
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.903
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.902
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.900
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.892
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.890
4b79 NADProbable short-chain dehydrogenase / 0.890
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.889
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.889
2bd0 NAPSepiapterin reductase / 0.887
2dte NAIGlucose 1-dehydrogenase related protein / 0.885
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.881
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.879
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.879
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.877
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.876
3sx2 NADUncharacterized protein / 0.875
4dbz NDPPutative ketoacyl reductase 1.3.1 0.874
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.873
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.873
3wds NADNADH-dependent quinuclidinone reductase / 0.870
1x7h NDPPutative ketoacyl reductase 1.3.1 0.869
4bmv NAPShort-chain dehydrogenase / 0.869
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.867
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.865
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.865
3s55 NADPutative short-chain dehydrogenase/reductase / 0.865
3tn7 NJPShort-chain alcohol dehydrogenase / 0.865
3l77 NJPShort-chain alcohol dehydrogenase / 0.864
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.863
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.858
1u7t TDT3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.856
1ae1 NAPTropinone reductase 1 / 0.853
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.852
4j7x NAPSepiapterin reductase 1.1.1.153 0.851
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.850
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.850
1oaa NAPSepiapterin reductase 1.1.1.153 0.848
1x7g NAPPutative ketoacyl reductase 1.3.1 0.848
3tsc NADUncharacterized protein / 0.844
3geg NADShort-chain dehydrogenase/reductase SDR / 0.843
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.842
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.841
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.838
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.838
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.836
3ak4 NADNADH-dependent quinuclidinone reductase / 0.835
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.835
1pr9 NAPL-xylulose reductase 1.1.1.10 0.834
3sju NDPKeto reductase / 0.831
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.830
3qrw NDPPutative ketoacyl reductase 1.3.1 0.830
2c29 NAPDihydroflavonol 4-reductase / 0.828
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.828
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.827
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.824
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.824
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.824
1xkq NDPUncharacterized protein / 0.823
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.821
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.820
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.816
4yai NAIC alpha-dehydrogenase / 0.814
2jah NDPClavaldehyde dehydrogenase / 0.810
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.810
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.807
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.807
1ipe NDPTropinone reductase 2 1.1.1.236 0.806
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.806
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.804
1w4z NAPPutative ketoacyl reductase 1.3.1 0.803
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.802
3d3w NAPL-xylulose reductase 1.1.1.10 0.802
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.800
4qec NAPElxO / 0.799
3ai2 NDPNADPH-sorbose reductase / 0.798
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.798
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.797
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.797
2wsb NADGalactitol dehydrogenase / 0.797
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.796
4yag NAIC alpha-dehydrogenase / 0.794
4fn4 NADShort chain dehydrogenase / 0.793
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.793
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.787
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.787
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.786
4wec NADShort chain dehydrogenase / 0.786
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.784
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.784
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.782
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.781
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.776
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.774
4u7w NDPMxaA / 0.773
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.769
2yut NAPPutative short-chain oxidoreductase / 0.768
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.767
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.765
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.765
5jyd NADShort chain dehydrogenase / 0.764
3ai3 NDPNADPH-sorbose reductase / 0.763
2yy7 NADL-threonine dehydrogenase / 0.762
4hxy NDPPlm1 / 0.762
1rkx NADCDP-D-glucose-4,6-dehydratase / 0.761
2wdz NADGalactitol dehydrogenase / 0.761
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.760
3ruh NADUDP-N-acetylglucosamine 4-epimerase / 0.757
4qed NAPElxO / 0.756
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.755
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.755
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.754
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.753
3a4v NADNDP-sugar epimerase / 0.753
2bfo NDPPteridine reductase 1 1.5.1.33 0.752
2ag5 NAD3-hydroxybutyrate dehydrogenase type 2 / 0.750
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.748
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.748
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.747
2p5y NADUDP-glucose 4-epimerase / 0.747
3h4v NAPPteridine reductase 1 1.5.1.33 0.747
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.744
3r3s NADPutative oxidoreductase / 0.744
1zem NADXylitol dehydrogenase / 0.742
3u4c NDPNADPH-dependent reductase BacG / 0.742
4clo NAPPteridine reductase / 0.742
5jla NADPutative short-chain dehydrogenase/reductase / 0.741
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.740
4m87 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.740
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.739
3pdu NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.737
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.736
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.736
3tox NAPPutative oxidoreductase / 0.736
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.734
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.733
3uic NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.733
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.731
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.729
4lis NADUDP-glucose 4-epimerase (Eurofung) / 0.728
3bmo NAPPteridine reductase / 0.726
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.726
1b15 NAEAlcohol dehydrogenase 1.1.1.1 0.725
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.725
2b69 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.724
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.723
1wp4 NDP3-hydroxyisobutyrate dehydrogenase / 0.723
1b16 NAQAlcohol dehydrogenase 1.1.1.1 0.722
2h9i EADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.721
3mje NDPAmphB / 0.721
2hk9 NAPShikimate dehydrogenase (NADP(+)) / 0.720
2q1s NAIPutative nucleotide sugar epimerase/ dehydratase / 0.720
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.720
4eso NAPPutative oxidoreductase / 0.719
2cvz NDP3-hydroxyisobutyrate dehydrogenase / 0.718
1n7h NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.717
4dre NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.717
4imp NDPPolyketide synthase extender modules 3-4 / 0.717
1iy8 NADLevodione reductase / 0.716
5b1y NDP3-oxoacyl-[acyl-carrier-protein] reductase / 0.716
3aut NAIGlucose 1-dehydrogenase 4 1.1.1.47 0.715
1nyt NAPShikimate dehydrogenase (NADP(+)) / 0.714
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.714
3wmx NADNAD dependent epimerase/dehydratase / 0.714
2ntj P1HEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.713
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.713
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.711
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.711
3ko8 NADNAD-dependent epimerase/dehydratase / 0.709
4hbg NDP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.708
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.706
3uce NDPDehydrogenase / 0.706
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.705
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.705
3f1k NAPUncharacterized oxidoreductase YciK 1 0.704
4oxy NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.703
2b37 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.702
3ajr NADNDP-sugar epimerase / 0.702
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.702
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.701
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.701
1b2l NDCAlcohol dehydrogenase 1.1.1.1 0.698
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.697
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.697
5bt9 NAP3-oxoacyl-(Acyl-carrier-protein) reductase / 0.697
2iyp A2P6-phosphogluconate dehydrogenase, decarboxylating 1.1.1.44 0.695
3icp NADNAD-dependent epimerase/dehydratase / 0.695
3rue NADUDP-N-acetylglucosamine 4-epimerase / 0.695
3uxy NADShort-chain dehydrogenase/reductase SDR / 0.695
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.695
5d2e NAPMlnE / 0.695
5lc1 NADL-threonine 3-dehydrogenase / 0.695
3oew NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.694
5koi NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.694
1rpn NDPGDP-mannose 4,6-dehydratase / 0.693
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.693
2ydx NAPMethionine adenosyltransferase 2 subunit beta / 0.692
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.691
4bqp NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.691
4bv9 NDPKetimine reductase mu-crystallin 1.5.1.25 0.691
5jy1 NADPutative short-chain dehydrogenase/reductase / 0.691
1i2b NADUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.690
4trn NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.690
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.689
2hsd NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.688
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.688
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.687
1n2s NAIdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.685
2aqh NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.685
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.685
1orr NADCDP-paratose 2-epimerase / 0.683
4ccq NAPThioredoxin reductase / 0.682
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.681
4cql NADEstradiol 17-beta-dehydrogenase 8 1.1.1.62 0.681
4fw8 NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.681
4bgi NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.678
4xb2 NDP319aa long hypothetical homoserine dehydrogenase / 0.678
4gcm NAPThioredoxin reductase 1.8.1.9 0.677
4z0p NDPNAD-dependent dehydrogenase / 0.677
3pef NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.674
3aw9 NADNAD-dependent epimerase/dehydratase / 0.673
3of2 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.673
2ntv P1HEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.671
1enp NADEnoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic 1.3.1.9 0.670
2ie0 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.670
4idg NADPutative UDP-glucose 4-epimerase / 0.669
1g1a NADdTDP-glucose 4,6-dehydratase / 0.668
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.667
3a1n NADNDP-sugar epimerase / 0.666
2aqi NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.665
1ek5 NADUDP-glucose 4-epimerase / 0.664
2aqk NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.664
1t2a NDPGDP-mannose 4,6 dehydratase 4.2.1.47 0.663
2aq8 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.663
2nq8 ZIDEnoyl-ACP reductase / 0.663
1fk8 NAD3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase 1.1.1.50 0.662
3orf NADDihydropteridine reductase 1.5.1.34 0.662
3s5w NAPL-ornithine N(5)-monooxygenase / 0.662
2q0l NAPThioredoxin reductase 1.8.1.9 0.661
4b8w NAPGDP-L-fucose synthase 1.1.1.271 0.661
4dqu NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.661
4tqg NDPPutative dTDP-d-glucose 4 6-dehydratase / 0.661
4twr NADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase / 0.660
4up3 NDPThioredoxin reductase / 0.660
1hdo NAPFlavin reductase (NADPH) / 0.659
4egb NADdTDP-glucose 4,6-dehydratase / 0.659
4gll NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.659
4b8z NAPGDP-L-fucose synthase 1.1.1.271 0.658
2z1m NDPGDP-mannose 4,6-dehydratase / 0.657
2hun NAD336aa long hypothetical dTDP-glucose 4,6-dehydratase / 0.655
2ieb ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.655
2x6t NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.655
4bii NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.655
4ej0 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.655
1kc1 NDPdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.654
2yw9 NAPEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.653
3w6u NAP6-phosphogluconate dehydrogenase, NAD-binding protein / 0.653
4wji NAPPutative cyclohexadienyl dehydrogenase and ADH prephenate dehydrogenase / 0.652
1enz NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.651
2c3c NAP2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.651
4bkq NAIEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.651
2c54 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.650
3tri NAPPyrroline-5-carboxylate reductase / 0.650
4yr9 NADL-threonine 3-dehydrogenase, mitochondrial 1.1.1.103 0.650