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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3o0i P54 Heat shock protein HSP 90-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3o0i P54Heat shock protein HSP 90-alpha / 0.963
1uy8 PU5Heat shock protein HSP 90-alpha / 0.733
1uyh PU0Heat shock protein HSP 90-alpha / 0.724
3qdd 94MHeat shock protein HSP 90-alpha / 0.720
2h55 DZ8Heat shock protein HSP 90-alpha / 0.698
1uy7 PU4Heat shock protein HSP 90-alpha / 0.697
2fwz H71Heat shock protein HSP 90-alpha / 0.695
1uy9 PU6Heat shock protein HSP 90-alpha / 0.686
3o6o 94MHeat shock protein 83 / 0.686
1uyi PUZHeat shock protein HSP 90-alpha / 0.684
1uyf PU1Heat shock protein HSP 90-alpha / 0.683
1uyk PUXHeat shock protein HSP 90-alpha / 0.679
2fwy H64Heat shock protein HSP 90-alpha / 0.662
4e5f 0N7Polymerase acidic protein / 0.660
1uym PU3Heat shock protein HSP 90-beta / 0.657