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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3nwz COA BH2602 protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3nwz COABH2602 protein / 0.970
5kl9 COAAcyl-CoA thioester hydrolase YbgC 3.1.2 0.677
3lbe COAUncharacterized protein / 0.670
3r3d 4CO4-hydroxybenzoyl-CoA thioesterase 3.1.2.23 0.664
3r35 4CO4-hydroxybenzoyl-CoA thioesterase 3.1.2.23 0.659
3r32 4CO4-hydroxybenzoyl-CoA thioesterase 3.1.2.23 0.658
3r37 4CO4-hydroxybenzoyl-CoA thioesterase 3.1.2.23 0.650