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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3nwl NDP Catalase 1.11.1.6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3nwl NDPCatalase 1.11.1.6 1.185
1dgf NDPCatalase 1.11.1.6 0.957
1dgb NDPCatalase 1.11.1.6 0.939
1dgh NDPCatalase 1.11.1.6 0.924
1dgg NDPCatalase 1.11.1.6 0.852
4e37 NDPCatalase 1.11.1.6 0.788
7cat NDPCatalase 1.11.1.6 0.768
8cat NDPCatalase 1.11.1.6 0.765
2cah NDPCatalase 1.11.1.6 0.730
4blc NDPCatalase 1.11.1.6 0.660