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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ntq NAD Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase 1.1.1.18

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ntq NADInositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase 1.1.1.18 0.992
3ntr NADInositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase 1.1.1.18 0.859
3nt2 NAIInositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase 1.1.1.18 0.757
3nt2 NADInositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase 1.1.1.18 0.726
4o59 NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.694
3ec7 NADInositol 2-dehydrogenase / 0.679
3nt5 NAIInositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase 1.1.1.18 0.678
3f3s NADLambda-crystallin homolog / 0.677
4k9d NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.676
1vsv NADGlyceraldehyde-3-phosphate dehydrogenase / 0.674
4l8v NAPInositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase 1.1.1.18 0.673
3ggp NADPrephenate dehydrogenase / 0.672
2ome NADC-terminal-binding protein 2 / 0.669
3m2t NADProbable dehydrogenase / 0.668
2voj NADAlanine dehydrogenase 1.4.1.1 0.667
3ids NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.667
3keo NADRedox-sensing transcriptional repressor Rex / 0.667
3n7u NADFormate dehydrogenase, chloroplastic/mitochondrial / 0.667
3pqf NADL-lactate dehydrogenase 1.1.1.27 0.666
3l4s NADGlyceraldehyde-3-phosphate dehydrogenase 1 / 0.664
1nq5 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.663
1u8f NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.662
3ikt NADRedox-sensing transcriptional repressor Rex / 0.662
2vhw NAIAlanine dehydrogenase 1.4.1.1 0.661
3wv7 ADPHmd co-occurring protein HcgE / 0.661
3d4p NADL-lactate dehydrogenase 1 1.1.1.27 0.660
2vhx NADAlanine dehydrogenase 1.4.1.1 0.659
2vhz NAIAlanine dehydrogenase 1.4.1.1 0.658
3jv7 NADSecondary alcohol dehydrogenase / 0.658
2g82 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.657
2v7g NADUrocanate hydratase 4.2.1.49 0.657
1hdz NADAlcohol dehydrogenase 1B 1.1.1.1 0.656
3ket NADRedox-sensing transcriptional repressor Rex / 0.656
3nt4 NAIInositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase 1.1.1.18 0.656
1axe NADAlcohol dehydrogenase E chain 1.1.1.1 0.655
1dss NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.655
1p1h NADInositol-3-phosphate synthase 5.5.1.4 0.655
1psd NADD-3-phosphoglycerate dehydrogenase 1.1.1.95 0.655
1szj NADGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.655
2ixb NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.655
3orf NADDihydropteridine reductase 1.5.1.34 0.655
3pvz NADUDP-N-acetylglucosamine 4,6-dehydratase / 0.655
4xd2 NAIAlcohol dehydrogenase E chain 1.1.1.1 0.655
1nvm NADAcetaldehyde dehydrogenase 1.2.1.10 0.654
1nqa NADGlyceraldehyde-3-phosphate dehydrogenase / 0.653
1ihx SNDGlyceraldehyde-3-phosphate dehydrogenase 1.2.1.12 0.651
1sc6 NADD-3-phosphoglycerate dehydrogenase 1.1.1.95 0.651
3jyp NADQuinate/shikimate dehydrogenase (NAD(+)) / 0.651
2ixa NADAlpha-N-acetylgalactosaminidase 3.2.1.49 0.650
3k2b NADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic 1.2.1.13 0.650