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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3nta COA FAD-dependent pyridine nucleotide-disulphide oxidoreductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3nta COAFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 1.528
3nt6 COAFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 1.390
3ntd COAFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 1.284
4ocg COAFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 1.158
3ics COACoenzyme A disulfide reductase / 0.973
3icr COACoenzyme A disulfide reductase / 0.971
3ict COACoenzyme A disulfide reductase / 0.949
4gcm NAPThioredoxin reductase 1.8.1.9 0.680
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.667
2yvj NAIFerredoxin reductase / 0.655
3cgb COACoenzyme A disulfide reductase / 0.655