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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3nlr JRS Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3nlr JRSNitric oxide synthase, brain 1.14.13.39 1.046
3nlp JSSNitric oxide synthase, brain 1.14.13.39 0.926
3jx0 JI4Nitric oxide synthase, brain 1.14.13.39 0.856
3nlw 3XFNitric oxide synthase, brain 1.14.13.39 0.848
3ufo HW4Nitric oxide synthase, brain 1.14.13.39 0.848
3nlv 3XANitric oxide synthase, brain 1.14.13.39 0.843
3nln JRSNitric oxide synthase, brain 1.14.13.39 0.842
3tym 08RNitric oxide synthase, brain 1.14.13.39 0.840
3ufq HW5Nitric oxide synthase, brain 1.14.13.39 0.838
3jx4 J11Nitric oxide synthase, brain 1.14.13.39 0.834
3ufr H5WNitric oxide synthase, brain 1.14.13.39 0.833
3jwu J11Nitric oxide synthase, brain 1.14.13.39 0.831
3jx2 JI4Nitric oxide synthase, brain 1.14.13.39 0.831
3n62 XFJNitric oxide synthase, brain 1.14.13.39 0.819
3tyl AXWNitric oxide synthase, brain 1.14.13.39 0.809
3nlk JSSNitric oxide synthase, brain 1.14.13.39 0.803
3n61 XFJNitric oxide synthase, brain 1.14.13.39 0.797
4imt 1EWNitric oxide synthase, brain 1.14.13.39 0.791
4imw 1EVNitric oxide synthase, brain 1.14.13.39 0.791
4k5g Q13Nitric oxide synthase, brain 1.14.13.39 0.787
3jws JI4Nitric oxide synthase, brain 1.14.13.39 0.775
4lux QJ8Nitric oxide synthase, brain 1.14.13.39 0.772
3n65 XFJNitric oxide synthase, brain 1.14.13.39 0.769
3b3o JI3Nitric oxide synthase, brain 1.14.13.39 0.765
3b3p JI7Nitric oxide synthase, brain 1.14.13.39 0.765
3jx5 J14Nitric oxide synthase, brain 1.14.13.39 0.765
4eux HW1Nitric oxide synthase, brain 1.14.13.39 0.765
4jsi Q05Nitric oxide synthase, brain 1.14.13.39 0.765
4imu 1ETNitric oxide synthase, brain 1.14.13.39 0.761
4jsj QJ7Nitric oxide synthase, brain 1.14.13.39 0.756
3n5w XFJNitric oxide synthase, brain 1.14.13.39 0.754
3n5x XFKNitric oxide synthase, brain 1.14.13.39 0.742
3ufp H4WNitric oxide synthase, brain 1.14.13.39 0.742
4k5e 1Q7Nitric oxide synthase, brain 1.14.13.39 0.741
4k5d 1Q6Nitric oxide synthase, brain 1.14.13.39 0.737
3dqr JI2Nitric oxide synthase, brain 1.14.13.39 0.732
4cx4 HW9Nitric oxide synthase, brain 1.14.13.39 0.731
4jsg Q10Nitric oxide synthase, brain 1.14.13.39 0.728
3n5z XFMNitric oxide synthase, brain 1.14.13.39 0.726
3ufw HW0Nitric oxide synthase, brain 1.14.13.39 0.725
4k5f Q14Nitric oxide synthase, brain 1.14.13.39 0.725
3nlo JSRNitric oxide synthase, brain 1.14.13.39 0.719
3nnz 59WNitric oxide synthase, brain 1.14.13.39 0.718
3jx6 JI5Nitric oxide synthase, brain 1.14.13.39 0.715
3n5v XFHNitric oxide synthase, brain 1.14.13.39 0.712
4jsf QJ4Nitric oxide synthase, brain 1.14.13.39 0.710
3n60 XFNNitric oxide synthase, brain 1.14.13.39 0.708
4jsh Q15Nitric oxide synthase, brain 1.14.13.39 0.705
3ufv HW9Nitric oxide synthase, brain 1.14.13.39 0.701
4ug9 1EWNitric oxide synthase oxygenase 1.14.13.165 0.697
4uga Q05Nitric oxide synthase oxygenase 1.14.13.165 0.692
4lwb QJ8Nitric oxide synthase oxygenase 1.14.13.165 0.687
4ug7 1EVNitric oxide synthase oxygenase 1.14.13.165 0.685
3n5y XFLNitric oxide synthase, brain 1.14.13.39 0.680
3e68 AT6Nitric oxide synthase, inducible 1.14.13.39 0.674
3png 8CXNitric oxide synthase, brain 1.14.13.39 0.674
4lwa Q13Nitric oxide synthase oxygenase 1.14.13.165 0.672
3nlq JRRNitric oxide synthase, brain 1.14.13.39 0.667
4ug5 XFKNitric oxide synthase oxygenase 1.14.13.165 0.664
3nlj JRRNitric oxide synthase, brain 1.14.13.39 0.660
3svq JK4Nitric oxide synthase, brain 1.14.13.39 0.659
4cx3 HW8Nitric oxide synthase, brain 1.14.13.39 0.656
2zhw 12UProthrombin 3.4.21.5 0.651
3jx3 JI5Nitric oxide synthase, brain 1.14.13.39 0.651