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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3nlp H4B Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3nlp H4BNitric oxide synthase, brain 1.14.13.39 0.933
2hx4 H4BNitric oxide synthase, brain 1.14.13.39 0.910
3jt5 H4BNitric oxide synthase, brain 1.14.13.39 0.910
3jx3 H4BNitric oxide synthase, brain 1.14.13.39 0.910
3rqm H4BNitric oxide synthase, brain 1.14.13.39 0.910
3ufu H4BNitric oxide synthase, brain 1.14.13.39 0.910
4cx5 H4BNitric oxide synthase, brain 1.14.13.39 0.910
1zzq H4BNitric oxide synthase, brain 1.14.13.39 0.909
1zzr H4BNitric oxide synthase, brain 1.14.13.39 0.909
1zzu H4BNitric oxide synthase, brain 1.14.13.39 0.909
3nnz H4BNitric oxide synthase, brain 1.14.13.39 0.909
4cx3 H4BNitric oxide synthase, brain 1.14.13.39 0.909
4cx4 H4BNitric oxide synthase, brain 1.14.13.39 0.909
4fvx H4BNitric oxide synthase, brain 1.14.13.39 0.909
3b3o H4BNitric oxide synthase, brain 1.14.13.39 0.908
3dqr H4BNitric oxide synthase, brain 1.14.13.39 0.908
3jwt H4BNitric oxide synthase, brain 1.14.13.39 0.908
3b3m H4BNitric oxide synthase, brain 1.14.13.39 0.907
3rqj H4BNitric oxide synthase, brain 1.14.13.39 0.907
3b3n H4BNitric oxide synthase, brain 1.14.13.39 0.906
3jt8 H4BNitric oxide synthase, brain 1.14.13.39 0.906
3pne H4BNitric oxide synthase, brain 1.14.13.39 0.906
4fw0 H4BNitric oxide synthase, brain 1.14.13.39 0.906
1m00 H4BNitric oxide synthase, brain 1.14.13.39 0.904
3jwu H4BNitric oxide synthase, brain 1.14.13.39 0.904
3jwv H4BNitric oxide synthase, brain 1.14.13.39 0.904
3jx4 H4BNitric oxide synthase, brain 1.14.13.39 0.904
3nly H4BNitric oxide synthase, brain 1.14.13.39 0.904
3rql H4BNitric oxide synthase, brain 1.14.13.39 0.904
4fvz H4BNitric oxide synthase, brain 1.14.13.39 0.904
3tym H4BNitric oxide synthase, brain 1.14.13.39 0.903
4jsg H4BNitric oxide synthase, brain 1.14.13.39 0.898
1rs7 H4BNitric oxide synthase, brain 1.14.13.39 0.891
4k5g H4BNitric oxide synthase, brain 1.14.13.39 0.891
1mmv H4BNitric oxide synthase, brain 1.14.13.39 0.890
1p6k H4BNitric oxide synthase, brain 1.14.13.39 0.890
4lux H4BNitric oxide synthase, brain 1.14.13.39 0.890
1k2u H4BNitric oxide synthase, brain 1.14.13.39 0.889
3ufv H4BNitric oxide synthase, brain 1.14.13.39 0.889
4fvy H4BNitric oxide synthase, brain 1.14.13.39 0.889
1rs6 H4BNitric oxide synthase, brain 1.14.13.39 0.888
4d1o H4BNitric oxide synthase, endothelial 1.14.13.39 0.888
5agl H4BNitric oxide synthase, brain 1.14.13.39 0.888
1p6j H4BNitric oxide synthase, brain 1.14.13.39 0.887
3jta H4BNitric oxide synthase, brain 1.14.13.39 0.887
4k5e H4BNitric oxide synthase, brain 1.14.13.39 0.887
3jt4 H4BNitric oxide synthase, brain 1.14.13.39 0.886
3nlw H4BNitric oxide synthase, brain 1.14.13.39 0.886
3nny H4BNitric oxide synthase, brain 1.14.13.39 0.886
3ufw H4BNitric oxide synthase, brain 1.14.13.39 0.886
4gqe H4BNitric oxide synthase, brain 1.14.13.39 0.886
3hsn H4BNitric oxide synthase, brain 1.14.13.39 0.885
3jt9 H4BNitric oxide synthase, brain 1.14.13.39 0.885
4eux H4BNitric oxide synthase, brain 1.14.13.39 0.885
3jx6 H4BNitric oxide synthase, brain 1.14.13.39 0.884
3ufs H4BNitric oxide synthase, brain 1.14.13.39 0.884
3svp H4BNitric oxide synthase, brain 1.14.13.39 0.883
3pnf H4BNitric oxide synthase, brain 1.14.13.39 0.882
3nlr H4BNitric oxide synthase, brain 1.14.13.39 0.881
1k2t H4BNitric oxide synthase, brain 1.14.13.39 0.874
3n5y H4BNitric oxide synthase, brain 1.14.13.39 0.872
3rqk H4BNitric oxide synthase, brain 1.14.13.39 0.872
3ufq H4BNitric oxide synthase, brain 1.14.13.39 0.872
4jsf H4BNitric oxide synthase, brain 1.14.13.39 0.872
3b3p H4BNitric oxide synthase, brain 1.14.13.39 0.870
3q99 H4BNitric oxide synthase, brain 1.14.13.39 0.870
4imt H4BNitric oxide synthase, brain 1.14.13.39 0.869
3nln H4BNitric oxide synthase, brain 1.14.13.39 0.868
3ufo H4BNitric oxide synthase, brain 1.14.13.39 0.866
3fc5 H4BNitric oxide synthase, brain 1.14.13.39 0.865
3nlz H4BNitric oxide synthase, brain 1.14.13.39 0.865
3tyl H4BNitric oxide synthase, brain 1.14.13.39 0.861
3nlq H4BNitric oxide synthase, brain 1.14.13.39 0.857
1zvl H4BNitric oxide synthase, brain 1.14.13.39 0.856
1k2s H4BNitric oxide synthase, brain 1.14.13.39 0.855
3n61 H4BNitric oxide synthase, brain 1.14.13.39 0.852
3jx5 H4BNitric oxide synthase, brain 1.14.13.39 0.851
3png H4BNitric oxide synthase, brain 1.14.13.39 0.849
5agk H4BNitric oxide synthase, brain 1.14.13.39 0.844
4imw H4BNitric oxide synthase, brain 1.14.13.39 0.837
4jsi H4BNitric oxide synthase, brain 1.14.13.39 0.835
3nlv H4BNitric oxide synthase, brain 1.14.13.39 0.834
4jsh H4BNitric oxide synthase, brain 1.14.13.39 0.834
3jt6 H4BNitric oxide synthase, brain 1.14.13.39 0.832
3jx2 H4BNitric oxide synthase, brain 1.14.13.39 0.832
4k5f H4BNitric oxide synthase, brain 1.14.13.39 0.831
4k5d H4BNitric oxide synthase, brain 1.14.13.39 0.827
3q9a H4BNitric oxide synthase, brain 1.14.13.39 0.826
3uft H4BNitric oxide synthase, brain 1.14.13.39 0.826
2hx3 H4BNitric oxide synthase, brain 1.14.13.39 0.825
5agp H4BNitric oxide synthase, brain 1.14.13.39 0.825
3svq H4BNitric oxide synthase, brain 1.14.13.39 0.822
3nlo H4BNitric oxide synthase, brain 1.14.13.39 0.815
1om5 H4BNitric oxide synthase, brain 1.14.13.39 0.814
3nlk H4BNitric oxide synthase, brain 1.14.13.39 0.812
3jt3 H4BNitric oxide synthase, brain 1.14.13.39 0.811
4jse H4BNitric oxide synthase, brain 1.14.13.39 0.807
3n5v H4BNitric oxide synthase, brain 1.14.13.39 0.801
3jt7 H4BNitric oxide synthase, brain 1.14.13.39 0.800
3n5z H4BNitric oxide synthase, brain 1.14.13.39 0.796
3ufp H4BNitric oxide synthase, brain 1.14.13.39 0.788
3ufr H4BNitric oxide synthase, brain 1.14.13.39 0.778
3nlj H4BNitric oxide synthase, brain 1.14.13.39 0.775
4imu H4BNitric oxide synthase, brain 1.14.13.39 0.773
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2g6i HBINitric oxide synthase, brain 1.14.13.39 0.742
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.735
1dwx H4BNitric oxide synthase, inducible 1.14.13.39 0.722
1vaf H4BNitric oxide synthase, inducible 1.14.13.39 0.712
3dwj H4BNitric oxide synthase, inducible 1.14.13.39 0.712
3e6o H4BNitric oxide synthase, inducible 1.14.13.39 0.705
2y37 H4BNitric oxide synthase, inducible 1.14.13.39 0.701
3e7i H4BNitric oxide synthase, inducible 1.14.13.39 0.680
1r35 H4BNitric oxide synthase, inducible 1.14.13.39 0.669
4gvq N4MMethenyltetrahydromethanopterin cyclohydrolase 3.5.4.27 0.667
1m8i H4BNitric oxide synthase, inducible 1.14.13.39 0.661
4e5f 0N7Polymerase acidic protein / 0.660
1m8e H4BNitric oxide synthase, inducible 1.14.13.39 0.651