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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3nlo H4B Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3nlo H4BNitric oxide synthase, brain 1.14.13.39 0.948
3nlk H4BNitric oxide synthase, brain 1.14.13.39 0.922
3jwu H4BNitric oxide synthase, brain 1.14.13.39 0.921
3jt8 H4BNitric oxide synthase, brain 1.14.13.39 0.919
3nlv H4BNitric oxide synthase, brain 1.14.13.39 0.916
3pne H4BNitric oxide synthase, brain 1.14.13.39 0.903
4fvx H4BNitric oxide synthase, brain 1.14.13.39 0.903
3b3o H4BNitric oxide synthase, brain 1.14.13.39 0.902
3rqj H4BNitric oxide synthase, brain 1.14.13.39 0.902
4fw0 H4BNitric oxide synthase, brain 1.14.13.39 0.902
3ufp H4BNitric oxide synthase, brain 1.14.13.39 0.901
3hsn H4BNitric oxide synthase, brain 1.14.13.39 0.899
3jx6 H4BNitric oxide synthase, brain 1.14.13.39 0.899
1m00 H4BNitric oxide synthase, brain 1.14.13.39 0.898
4jsi H4BNitric oxide synthase, brain 1.14.13.39 0.898
3dqr H4BNitric oxide synthase, brain 1.14.13.39 0.897
3jwv H4BNitric oxide synthase, brain 1.14.13.39 0.897
3jt6 H4BNitric oxide synthase, brain 1.14.13.39 0.893
3nlr H4BNitric oxide synthase, brain 1.14.13.39 0.891
3ufs H4BNitric oxide synthase, brain 1.14.13.39 0.889
5agl H4BNitric oxide synthase, brain 1.14.13.39 0.888
5agp H4BNitric oxide synthase, brain 1.14.13.39 0.888
3nln H4BNitric oxide synthase, brain 1.14.13.39 0.887
3svp H4BNitric oxide synthase, brain 1.14.13.39 0.887
4gqe H4BNitric oxide synthase, brain 1.14.13.39 0.887
5agk H4BNitric oxide synthase, brain 1.14.13.39 0.887
1zzq H4BNitric oxide synthase, brain 1.14.13.39 0.886
3ufv H4BNitric oxide synthase, brain 1.14.13.39 0.886
4cx5 H4BNitric oxide synthase, brain 1.14.13.39 0.886
3rqm H4BNitric oxide synthase, brain 1.14.13.39 0.885
3ufw H4BNitric oxide synthase, brain 1.14.13.39 0.885
2hx4 H4BNitric oxide synthase, brain 1.14.13.39 0.884
3nnz H4BNitric oxide synthase, brain 1.14.13.39 0.884
3ufu H4BNitric oxide synthase, brain 1.14.13.39 0.884
1mmv H4BNitric oxide synthase, brain 1.14.13.39 0.883
2hx3 H4BNitric oxide synthase, brain 1.14.13.39 0.883
3b3n H4BNitric oxide synthase, brain 1.14.13.39 0.883
3nny H4BNitric oxide synthase, brain 1.14.13.39 0.883
3tym H4BNitric oxide synthase, brain 1.14.13.39 0.883
3jt3 H4BNitric oxide synthase, brain 1.14.13.39 0.882
4jsg H4BNitric oxide synthase, brain 1.14.13.39 0.882
3jwt H4BNitric oxide synthase, brain 1.14.13.39 0.881
4cx4 H4BNitric oxide synthase, brain 1.14.13.39 0.880
4eux H4BNitric oxide synthase, brain 1.14.13.39 0.880
1zzu H4BNitric oxide synthase, brain 1.14.13.39 0.879
3pnf H4BNitric oxide synthase, brain 1.14.13.39 0.879
4k5f H4BNitric oxide synthase, brain 1.14.13.39 0.879
3nly H4BNitric oxide synthase, brain 1.14.13.39 0.878
4fvy H4BNitric oxide synthase, brain 1.14.13.39 0.876
1p6j H4BNitric oxide synthase, brain 1.14.13.39 0.875
3n5z H4BNitric oxide synthase, brain 1.14.13.39 0.875
4fvz H4BNitric oxide synthase, brain 1.14.13.39 0.874
4imt H4BNitric oxide synthase, brain 1.14.13.39 0.874
4lux H4BNitric oxide synthase, brain 1.14.13.39 0.874
1k2u H4BNitric oxide synthase, brain 1.14.13.39 0.871
3q9a H4BNitric oxide synthase, brain 1.14.13.39 0.871
3b3m H4BNitric oxide synthase, brain 1.14.13.39 0.870
3rql H4BNitric oxide synthase, brain 1.14.13.39 0.870
4k5e H4BNitric oxide synthase, brain 1.14.13.39 0.870
3ufq H4BNitric oxide synthase, brain 1.14.13.39 0.869
4k5d H4BNitric oxide synthase, brain 1.14.13.39 0.869
3jt5 H4BNitric oxide synthase, brain 1.14.13.39 0.868
3nlw H4BNitric oxide synthase, brain 1.14.13.39 0.868
3b3p H4BNitric oxide synthase, brain 1.14.13.39 0.867
4jsf H4BNitric oxide synthase, brain 1.14.13.39 0.867
1zzr H4BNitric oxide synthase, brain 1.14.13.39 0.866
4k5g H4BNitric oxide synthase, brain 1.14.13.39 0.866
3jt9 H4BNitric oxide synthase, brain 1.14.13.39 0.864
3jx3 H4BNitric oxide synthase, brain 1.14.13.39 0.863
3fc5 H4BNitric oxide synthase, brain 1.14.13.39 0.861
3jta H4BNitric oxide synthase, brain 1.14.13.39 0.858
3q99 H4BNitric oxide synthase, brain 1.14.13.39 0.854
3tyl H4BNitric oxide synthase, brain 1.14.13.39 0.854
3nlq H4BNitric oxide synthase, brain 1.14.13.39 0.852
4imw H4BNitric oxide synthase, brain 1.14.13.39 0.852
1k2t H4BNitric oxide synthase, brain 1.14.13.39 0.849
3jx2 H4BNitric oxide synthase, brain 1.14.13.39 0.849
3nlz H4BNitric oxide synthase, brain 1.14.13.39 0.848
3rqk H4BNitric oxide synthase, brain 1.14.13.39 0.848
4cx3 H4BNitric oxide synthase, brain 1.14.13.39 0.848
3jt4 H4BNitric oxide synthase, brain 1.14.13.39 0.847
3n5y H4BNitric oxide synthase, brain 1.14.13.39 0.845
3jx5 H4BNitric oxide synthase, brain 1.14.13.39 0.844
1p6k H4BNitric oxide synthase, brain 1.14.13.39 0.843
3jt7 H4BNitric oxide synthase, brain 1.14.13.39 0.842
3uft H4BNitric oxide synthase, brain 1.14.13.39 0.841
4jsh H4BNitric oxide synthase, brain 1.14.13.39 0.840
3ufr H4BNitric oxide synthase, brain 1.14.13.39 0.836
3n61 H4BNitric oxide synthase, brain 1.14.13.39 0.835
3png H4BNitric oxide synthase, brain 1.14.13.39 0.831
1rs6 H4BNitric oxide synthase, brain 1.14.13.39 0.830
3nlj H4BNitric oxide synthase, brain 1.14.13.39 0.815
3nlp H4BNitric oxide synthase, brain 1.14.13.39 0.815
4d1o H4BNitric oxide synthase, endothelial 1.14.13.39 0.814
3ufo H4BNitric oxide synthase, brain 1.14.13.39 0.811
1om5 H4BNitric oxide synthase, brain 1.14.13.39 0.807
1zvl H4BNitric oxide synthase, brain 1.14.13.39 0.802
4jse H4BNitric oxide synthase, brain 1.14.13.39 0.787
3svq H4BNitric oxide synthase, brain 1.14.13.39 0.774
3nos H4BNitric oxide synthase, endothelial 1.14.13.39 0.772
1k2s H4BNitric oxide synthase, brain 1.14.13.39 0.771
3jx4 H4BNitric oxide synthase, brain 1.14.13.39 0.765
1vaf H4BNitric oxide synthase, inducible 1.14.13.39 0.747
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3n5v H4BNitric oxide synthase, brain 1.14.13.39 0.743
2g6i HBINitric oxide synthase, brain 1.14.13.39 0.732
3nw2 H4BNitric oxide synthase, inducible 1.14.13.39 0.727
3dwj H4BNitric oxide synthase, inducible 1.14.13.39 0.707
2y37 H4BNitric oxide synthase, inducible 1.14.13.39 0.704
1dwx H4BNitric oxide synthase, inducible 1.14.13.39 0.699
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.699
3e6o H4BNitric oxide synthase, inducible 1.14.13.39 0.698
1qw5 H4BNitric oxide synthase, inducible 1.14.13.39 0.689
3e7g H4BNitric oxide synthase, inducible 1.14.13.39 0.689
3e7i H4BNitric oxide synthase, inducible 1.14.13.39 0.682
1r35 H4BNitric oxide synthase, inducible 1.14.13.39 0.675
4e5f 0N7Polymerase acidic protein / 0.660
1m8h H4BNitric oxide synthase, inducible 1.14.13.39 0.656
1m8d H4BNitric oxide synthase, inducible 1.14.13.39 0.652