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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ni5 C1H Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.873
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.773
3mhc ARZCarbonic anhydrase 2 4.2.1.1 0.770
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.767
4xiw AZMCarbonic anhydrase, alpha type / 0.762
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.757
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.749
4uov AZMCarbonate dehydratase / 0.747
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.746
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.745
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.735
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.735
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.726
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.725
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.718
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.713
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.713
3mdz EZLCarbonic anhydrase 7 4.2.1.1 0.713
3d9z D9ZCarbonic anhydrase 2 4.2.1.1 0.712
3dcc D9ZCarbonic anhydrase 2 4.2.1.1 0.711
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.709
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.706
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.704
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.702
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.700
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.697
1kwr SG2Carbonic anhydrase 2 4.2.1.1 0.694
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.693
1bn3 AL6Carbonic anhydrase 2 4.2.1.1 0.691
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.690
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.690
1bnn AL1Carbonic anhydrase 2 4.2.1.1 0.688
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.684
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.684
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.682
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.680
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.679
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.679
3daz MZMCarbonic anhydrase 2 4.2.1.1 0.678
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.676
3m5e JDRCarbonic anhydrase 2 4.2.1.1 0.676
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.676
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.675
4kp8 E1GCarbonic anhydrase 12 4.2.1.1 0.675
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.675
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.673
5fl4 9FKCarbonic anhydrase 9 4.2.1.1 0.673
2nmx M25Carbonic anhydrase 1 4.2.1.1 0.672
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.672
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.671
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.671
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.670
1i90 INMCarbonic anhydrase 2 4.2.1.1 0.669
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.669
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.669
3eft 3BSCarbonic anhydrase 2 4.2.1.1 0.668
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.667
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.667
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.666
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.665
3oy0 OY0Carbonic anhydrase 2 4.2.1.1 0.665
3oys OYSCarbonic anhydrase 2 4.2.1.1 0.665
3s8x E59Carbonic anhydrase 2 4.2.1.1 0.665
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.665
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.665
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.664
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.663
1i9p IOECarbonic anhydrase 2 4.2.1.1 0.663
1cny EG3Carbonic anhydrase 2 4.2.1.1 0.662
4kap 1QVCarbonic anhydrase 2 4.2.1.1 0.662
1g54 FFBCarbonic anhydrase 2 4.2.1.1 0.661
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.661
3n4b WWZCarbonic anhydrase 2 4.2.1.1 0.661
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.658
3m2y BE0Carbonic anhydrase 2 4.2.1.1 0.656
3po6 DT9Carbonic anhydrase 2 4.2.1.1 0.656
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.654
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.653
2h15 B19Carbonic anhydrase 2 4.2.1.1 0.653
1i9n IOACarbonic anhydrase 2 4.2.1.1 0.652
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.652
2nn7 M29Carbonic anhydrase 1 4.2.1.1 0.652
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.651
1i9q IOFCarbonic anhydrase 2 4.2.1.1 0.650