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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3n8y DIF Prostaglandin G/H synthase 1 1.14.99.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3n8y DIFProstaglandin G/H synthase 1 1.14.99.1 1.044
4oty LURProstaglandin G/H synthase 2 1.14.99.1 0.791
1pxx DIFProstaglandin G/H synthase 2 1.14.99.1 0.786
4rrw LURProstaglandin G/H synthase 2 1.14.99.1 0.763
4rrz LURProstaglandin G/H synthase 2 1.14.99.1 0.763
5ikq JMSProstaglandin G/H synthase 2 1.14.99.1 0.730
5ikr ID8Prostaglandin G/H synthase 2 1.14.99.1 0.655