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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3n8w FLP Prostaglandin G/H synthase 1 1.14.99.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3n8w FLPProstaglandin G/H synthase 1 1.14.99.1 1.021
1eqh FLPProstaglandin G/H synthase 1 1.14.99.1 0.906
2ayl FLPProstaglandin G/H synthase 1 1.14.99.1 0.872
3n8z FLPProstaglandin G/H synthase 1 1.14.99.1 0.854
1eqg IBPProstaglandin G/H synthase 1 1.14.99.1 0.852
3pgh FLPProstaglandin G/H synthase 2 1.14.99.1 0.824
1ht5 FL2Prostaglandin G/H synthase 1 1.14.99.1 0.805
1q4g BFLProstaglandin G/H synthase 1 1.14.99.1 0.751
3rr3 FLRProstaglandin G/H synthase 2 1.14.99.1 0.746
3q7d NPXProstaglandin G/H synthase 2 1.14.99.1 0.735
4ph9 IBPProstaglandin G/H synthase 2 1.14.99.1 0.655
1njd UMPThymidylate synthase / 0.650