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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3n66 XFN Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3n66 XFNNitric oxide synthase, brain 1.14.13.39 0.928
3n60 XFNNitric oxide synthase, brain 1.14.13.39 0.877
3n63 XFNNitric oxide synthase, brain 1.14.13.39 0.874
4jse QJ2Nitric oxide synthase, brain 1.14.13.39 0.738
3n5x XFKNitric oxide synthase, brain 1.14.13.39 0.733
4imu 1ETNitric oxide synthase, brain 1.14.13.39 0.733
3n61 XFJNitric oxide synthase, brain 1.14.13.39 0.720
4ug5 XFKNitric oxide synthase oxygenase 1.14.13.165 0.718
3nlw 3XFNitric oxide synthase, brain 1.14.13.39 0.716
3tym 08RNitric oxide synthase, brain 1.14.13.39 0.716
4jsf QJ4Nitric oxide synthase, brain 1.14.13.39 0.715
4jsg Q10Nitric oxide synthase, brain 1.14.13.39 0.714
3ufq HW5Nitric oxide synthase, brain 1.14.13.39 0.713
3ufo HW4Nitric oxide synthase, brain 1.14.13.39 0.712
4k5g Q13Nitric oxide synthase, brain 1.14.13.39 0.709
4jsh Q15Nitric oxide synthase, brain 1.14.13.39 0.708
4ug9 1EWNitric oxide synthase oxygenase 1.14.13.165 0.708
4eux HW1Nitric oxide synthase, brain 1.14.13.39 0.707
4uga Q05Nitric oxide synthase oxygenase 1.14.13.165 0.706
4k5d 1Q6Nitric oxide synthase, brain 1.14.13.39 0.705
4k5e 1Q7Nitric oxide synthase, brain 1.14.13.39 0.704
3tyl AXWNitric oxide synthase, brain 1.14.13.39 0.703
3b3o JI3Nitric oxide synthase, brain 1.14.13.39 0.702
3jx4 J11Nitric oxide synthase, brain 1.14.13.39 0.701
4ug7 1EVNitric oxide synthase oxygenase 1.14.13.165 0.700
4jsj QJ7Nitric oxide synthase, brain 1.14.13.39 0.699
4k5f Q14Nitric oxide synthase, brain 1.14.13.39 0.698
3jx2 JI4Nitric oxide synthase, brain 1.14.13.39 0.697
3e68 AT6Nitric oxide synthase, inducible 1.14.13.39 0.693
3n62 XFJNitric oxide synthase, brain 1.14.13.39 0.693
4lux QJ8Nitric oxide synthase, brain 1.14.13.39 0.693
3n5v XFHNitric oxide synthase, brain 1.14.13.39 0.690
3jwu J11Nitric oxide synthase, brain 1.14.13.39 0.689
4lwa Q13Nitric oxide synthase oxygenase 1.14.13.165 0.688
4lwb QJ8Nitric oxide synthase oxygenase 1.14.13.165 0.681
3n5z XFMNitric oxide synthase, brain 1.14.13.39 0.668
3n5y XFLNitric oxide synthase, brain 1.14.13.39 0.667
4jsi Q05Nitric oxide synthase, brain 1.14.13.39 0.651
4cx4 HW9Nitric oxide synthase, brain 1.14.13.39 0.650