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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3n61 XFJ Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3n61 XFJNitric oxide synthase, brain 1.14.13.39 0.949
3n65 XFJNitric oxide synthase, brain 1.14.13.39 0.882
3n62 XFJNitric oxide synthase, brain 1.14.13.39 0.875
4imw 1EVNitric oxide synthase, brain 1.14.13.39 0.855
4lux QJ8Nitric oxide synthase, brain 1.14.13.39 0.842
3n5w XFJNitric oxide synthase, brain 1.14.13.39 0.836
3n5x XFKNitric oxide synthase, brain 1.14.13.39 0.834
4imt 1EWNitric oxide synthase, brain 1.14.13.39 0.813
3nlr JRSNitric oxide synthase, brain 1.14.13.39 0.797
4k5g Q13Nitric oxide synthase, brain 1.14.13.39 0.789
4jsf QJ4Nitric oxide synthase, brain 1.14.13.39 0.786
3b3p JI7Nitric oxide synthase, brain 1.14.13.39 0.782
4imu 1ETNitric oxide synthase, brain 1.14.13.39 0.776
4ug5 XFKNitric oxide synthase oxygenase 1.14.13.165 0.776
3jx5 J14Nitric oxide synthase, brain 1.14.13.39 0.772
3nln JRSNitric oxide synthase, brain 1.14.13.39 0.772
3jx0 JI4Nitric oxide synthase, brain 1.14.13.39 0.770
3nlp JSSNitric oxide synthase, brain 1.14.13.39 0.769
3jx2 JI4Nitric oxide synthase, brain 1.14.13.39 0.767
4ug7 1EVNitric oxide synthase oxygenase 1.14.13.165 0.765
3nlw 3XFNitric oxide synthase, brain 1.14.13.39 0.764
4eux HW1Nitric oxide synthase, brain 1.14.13.39 0.764
3jx4 J11Nitric oxide synthase, brain 1.14.13.39 0.760
3ufq HW5Nitric oxide synthase, brain 1.14.13.39 0.760
3jws JI4Nitric oxide synthase, brain 1.14.13.39 0.758
3tym 08RNitric oxide synthase, brain 1.14.13.39 0.758
3ufp H4WNitric oxide synthase, brain 1.14.13.39 0.756
4jsi Q05Nitric oxide synthase, brain 1.14.13.39 0.755
3ufr H5WNitric oxide synthase, brain 1.14.13.39 0.754
3tyl AXWNitric oxide synthase, brain 1.14.13.39 0.751
3ufo HW4Nitric oxide synthase, brain 1.14.13.39 0.750
3n5z XFMNitric oxide synthase, brain 1.14.13.39 0.747
3nlk JSSNitric oxide synthase, brain 1.14.13.39 0.747
3b3o JI3Nitric oxide synthase, brain 1.14.13.39 0.746
4jse QJ2Nitric oxide synthase, brain 1.14.13.39 0.745
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3jwu J11Nitric oxide synthase, brain 1.14.13.39 0.740
3n5y XFLNitric oxide synthase, brain 1.14.13.39 0.739
4jsg Q10Nitric oxide synthase, brain 1.14.13.39 0.739
4k5e 1Q7Nitric oxide synthase, brain 1.14.13.39 0.736
3e68 AT6Nitric oxide synthase, inducible 1.14.13.39 0.731
3n63 XFNNitric oxide synthase, brain 1.14.13.39 0.731
3nlv 3XANitric oxide synthase, brain 1.14.13.39 0.731
4jsh Q15Nitric oxide synthase, brain 1.14.13.39 0.731
4jsj QJ7Nitric oxide synthase, brain 1.14.13.39 0.731
4k5f Q14Nitric oxide synthase, brain 1.14.13.39 0.728
4k5d 1Q6Nitric oxide synthase, brain 1.14.13.39 0.727
3nlo JSRNitric oxide synthase, brain 1.14.13.39 0.724
3n66 XFNNitric oxide synthase, brain 1.14.13.39 0.720
4ug9 1EWNitric oxide synthase oxygenase 1.14.13.165 0.707
3jx6 JI5Nitric oxide synthase, brain 1.14.13.39 0.701
3ufw HW0Nitric oxide synthase, brain 1.14.13.39 0.700
3n60 XFNNitric oxide synthase, brain 1.14.13.39 0.699
4cx4 HW9Nitric oxide synthase, brain 1.14.13.39 0.685
3nlq JRRNitric oxide synthase, brain 1.14.13.39 0.680
3n5v XFHNitric oxide synthase, brain 1.14.13.39 0.678
4lwa Q13Nitric oxide synthase oxygenase 1.14.13.165 0.677
4cx3 HW8Nitric oxide synthase, brain 1.14.13.39 0.669
4uga Q05Nitric oxide synthase oxygenase 1.14.13.165 0.669
4lwb QJ8Nitric oxide synthase oxygenase 1.14.13.165 0.668
3jx3 JI5Nitric oxide synthase, brain 1.14.13.39 0.664
4e5f 0N7Polymerase acidic protein / 0.660
3nnz 59WNitric oxide synthase, brain 1.14.13.39 0.658
3ufv HW9Nitric oxide synthase, brain 1.14.13.39 0.658
1qw5 14WNitric oxide synthase, inducible 1.14.13.39 0.653