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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3n60 XFN Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3n60 XFNNitric oxide synthase, brain 1.14.13.39 0.928
3n66 XFNNitric oxide synthase, brain 1.14.13.39 0.877
3n63 XFNNitric oxide synthase, brain 1.14.13.39 0.838
4ug9 1EWNitric oxide synthase oxygenase 1.14.13.165 0.743
4jse QJ2Nitric oxide synthase, brain 1.14.13.39 0.732
4imu 1ETNitric oxide synthase, brain 1.14.13.39 0.723
4jsg Q10Nitric oxide synthase, brain 1.14.13.39 0.710
3nlr JRSNitric oxide synthase, brain 1.14.13.39 0.708
3jx0 JI4Nitric oxide synthase, brain 1.14.13.39 0.707
3ufq HW5Nitric oxide synthase, brain 1.14.13.39 0.707
4k5g Q13Nitric oxide synthase, brain 1.14.13.39 0.704
4uga Q05Nitric oxide synthase oxygenase 1.14.13.165 0.704
3ufr H5WNitric oxide synthase, brain 1.14.13.39 0.703
3jwu J11Nitric oxide synthase, brain 1.14.13.39 0.702
3n61 XFJNitric oxide synthase, brain 1.14.13.39 0.699
4k5e 1Q7Nitric oxide synthase, brain 1.14.13.39 0.698
3n5x XFKNitric oxide synthase, brain 1.14.13.39 0.697
3tyl AXWNitric oxide synthase, brain 1.14.13.39 0.696
3nlo JSRNitric oxide synthase, brain 1.14.13.39 0.695
3ufp H4WNitric oxide synthase, brain 1.14.13.39 0.693
4jsj QJ7Nitric oxide synthase, brain 1.14.13.39 0.693
3jx2 JI4Nitric oxide synthase, brain 1.14.13.39 0.692
3tym 08RNitric oxide synthase, brain 1.14.13.39 0.692
4jsh Q15Nitric oxide synthase, brain 1.14.13.39 0.692
3nlp JSSNitric oxide synthase, brain 1.14.13.39 0.691
3nlk JSSNitric oxide synthase, brain 1.14.13.39 0.690
3nlv 3XANitric oxide synthase, brain 1.14.13.39 0.689
4lux QJ8Nitric oxide synthase, brain 1.14.13.39 0.688
4ug5 XFKNitric oxide synthase oxygenase 1.14.13.165 0.686
4eux HW1Nitric oxide synthase, brain 1.14.13.39 0.684
4k5f Q14Nitric oxide synthase, brain 1.14.13.39 0.682
3jx4 J11Nitric oxide synthase, brain 1.14.13.39 0.681
4lwa Q13Nitric oxide synthase oxygenase 1.14.13.165 0.681
4jsf QJ4Nitric oxide synthase, brain 1.14.13.39 0.680
4lwb QJ8Nitric oxide synthase oxygenase 1.14.13.165 0.680
3jx5 J14Nitric oxide synthase, brain 1.14.13.39 0.678
4k5d 1Q6Nitric oxide synthase, brain 1.14.13.39 0.678
3b3p JI7Nitric oxide synthase, brain 1.14.13.39 0.672
3nlw 3XFNitric oxide synthase, brain 1.14.13.39 0.670
3n5v XFHNitric oxide synthase, brain 1.14.13.39 0.669
3b3o JI3Nitric oxide synthase, brain 1.14.13.39 0.668
3e68 AT6Nitric oxide synthase, inducible 1.14.13.39 0.654
3nnz 59WNitric oxide synthase, brain 1.14.13.39 0.652