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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3n5y H4B Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3n5y H4BNitric oxide synthase, brain 1.14.13.39 0.918
3pnf H4BNitric oxide synthase, brain 1.14.13.39 0.909
3jx3 H4BNitric oxide synthase, brain 1.14.13.39 0.906
3jt5 H4BNitric oxide synthase, brain 1.14.13.39 0.905
1zzr H4BNitric oxide synthase, brain 1.14.13.39 0.902
1zzu H4BNitric oxide synthase, brain 1.14.13.39 0.902
3jwv H4BNitric oxide synthase, brain 1.14.13.39 0.902
3nly H4BNitric oxide synthase, brain 1.14.13.39 0.900
3nlv H4BNitric oxide synthase, brain 1.14.13.39 0.896
3nlz H4BNitric oxide synthase, brain 1.14.13.39 0.892
3jx2 H4BNitric oxide synthase, brain 1.14.13.39 0.891
3png H4BNitric oxide synthase, brain 1.14.13.39 0.891
4imt H4BNitric oxide synthase, brain 1.14.13.39 0.891
3rqm H4BNitric oxide synthase, brain 1.14.13.39 0.890
3ufu H4BNitric oxide synthase, brain 1.14.13.39 0.890
3jwt H4BNitric oxide synthase, brain 1.14.13.39 0.889
4cx5 H4BNitric oxide synthase, brain 1.14.13.39 0.889
1zzq H4BNitric oxide synthase, brain 1.14.13.39 0.888
3rqj H4BNitric oxide synthase, brain 1.14.13.39 0.888
4jsg H4BNitric oxide synthase, brain 1.14.13.39 0.888
4fvx H4BNitric oxide synthase, brain 1.14.13.39 0.887
3b3n H4BNitric oxide synthase, brain 1.14.13.39 0.886
3jt4 H4BNitric oxide synthase, brain 1.14.13.39 0.886
3jt7 H4BNitric oxide synthase, brain 1.14.13.39 0.886
3pne H4BNitric oxide synthase, brain 1.14.13.39 0.886
3b3m H4BNitric oxide synthase, brain 1.14.13.39 0.885
4fw0 H4BNitric oxide synthase, brain 1.14.13.39 0.885
3rql H4BNitric oxide synthase, brain 1.14.13.39 0.884
4jsi H4BNitric oxide synthase, brain 1.14.13.39 0.883
4cx3 H4BNitric oxide synthase, brain 1.14.13.39 0.875
3nnz H4BNitric oxide synthase, brain 1.14.13.39 0.873
4lux H4BNitric oxide synthase, brain 1.14.13.39 0.873
1mmv H4BNitric oxide synthase, brain 1.14.13.39 0.872
1p6j H4BNitric oxide synthase, brain 1.14.13.39 0.872
1p6k H4BNitric oxide synthase, brain 1.14.13.39 0.872
2hx4 H4BNitric oxide synthase, brain 1.14.13.39 0.872
3nlp H4BNitric oxide synthase, brain 1.14.13.39 0.872
4k5g H4BNitric oxide synthase, brain 1.14.13.39 0.872
3ufv H4BNitric oxide synthase, brain 1.14.13.39 0.871
4fvy H4BNitric oxide synthase, brain 1.14.13.39 0.871
3b3o H4BNitric oxide synthase, brain 1.14.13.39 0.870
3nlw H4BNitric oxide synthase, brain 1.14.13.39 0.869
3nny H4BNitric oxide synthase, brain 1.14.13.39 0.869
4gqe H4BNitric oxide synthase, brain 1.14.13.39 0.869
5agl H4BNitric oxide synthase, brain 1.14.13.39 0.869
1m00 H4BNitric oxide synthase, brain 1.14.13.39 0.868
3nlr H4BNitric oxide synthase, brain 1.14.13.39 0.868
3q99 H4BNitric oxide synthase, brain 1.14.13.39 0.868
4k5e H4BNitric oxide synthase, brain 1.14.13.39 0.868
3dqr H4BNitric oxide synthase, brain 1.14.13.39 0.867
3jt6 H4BNitric oxide synthase, brain 1.14.13.39 0.867
3jwu H4BNitric oxide synthase, brain 1.14.13.39 0.866
3hsn H4BNitric oxide synthase, brain 1.14.13.39 0.864
3jt8 H4BNitric oxide synthase, brain 1.14.13.39 0.864
3jx4 H4BNitric oxide synthase, brain 1.14.13.39 0.864
3n5z H4BNitric oxide synthase, brain 1.14.13.39 0.864
3jt9 H4BNitric oxide synthase, brain 1.14.13.39 0.861
3svp H4BNitric oxide synthase, brain 1.14.13.39 0.860
3jx5 H4BNitric oxide synthase, brain 1.14.13.39 0.858
5agp H4BNitric oxide synthase, brain 1.14.13.39 0.858
1rs7 H4BNitric oxide synthase, brain 1.14.13.39 0.855
4cx4 H4BNitric oxide synthase, brain 1.14.13.39 0.855
1rs6 H4BNitric oxide synthase, brain 1.14.13.39 0.854
4jsf H4BNitric oxide synthase, brain 1.14.13.39 0.854
4fvz H4BNitric oxide synthase, brain 1.14.13.39 0.853
3rqk H4BNitric oxide synthase, brain 1.14.13.39 0.852
3tym H4BNitric oxide synthase, brain 1.14.13.39 0.852
5agk H4BNitric oxide synthase, brain 1.14.13.39 0.852
3nln H4BNitric oxide synthase, brain 1.14.13.39 0.851
3ufo H4BNitric oxide synthase, brain 1.14.13.39 0.851
4k5d H4BNitric oxide synthase, brain 1.14.13.39 0.851
2hx3 H4BNitric oxide synthase, brain 1.14.13.39 0.850
3b3p H4BNitric oxide synthase, brain 1.14.13.39 0.850
3tyl H4BNitric oxide synthase, brain 1.14.13.39 0.850
1k2t H4BNitric oxide synthase, brain 1.14.13.39 0.849
4d1o H4BNitric oxide synthase, endothelial 1.14.13.39 0.848
3jx6 H4BNitric oxide synthase, brain 1.14.13.39 0.847
4eux H4BNitric oxide synthase, brain 1.14.13.39 0.847
3nlo H4BNitric oxide synthase, brain 1.14.13.39 0.845
3ufs H4BNitric oxide synthase, brain 1.14.13.39 0.845
4jsh H4BNitric oxide synthase, brain 1.14.13.39 0.838
3n5v H4BNitric oxide synthase, brain 1.14.13.39 0.832
3nlk H4BNitric oxide synthase, brain 1.14.13.39 0.831
3ufq H4BNitric oxide synthase, brain 1.14.13.39 0.826
3ufr H4BNitric oxide synthase, brain 1.14.13.39 0.823
3svq H4BNitric oxide synthase, brain 1.14.13.39 0.820
3jt3 H4BNitric oxide synthase, brain 1.14.13.39 0.817
3jta H4BNitric oxide synthase, brain 1.14.13.39 0.817
3n61 H4BNitric oxide synthase, brain 1.14.13.39 0.816
4imw H4BNitric oxide synthase, brain 1.14.13.39 0.808
1zvl H4BNitric oxide synthase, brain 1.14.13.39 0.803
4imu H4BNitric oxide synthase, brain 1.14.13.39 0.799
4jse H4BNitric oxide synthase, brain 1.14.13.39 0.798
3nlq H4BNitric oxide synthase, brain 1.14.13.39 0.794
1k2s H4BNitric oxide synthase, brain 1.14.13.39 0.789
3uft H4BNitric oxide synthase, brain 1.14.13.39 0.788
3ufw H4BNitric oxide synthase, brain 1.14.13.39 0.788
1k2u H4BNitric oxide synthase, brain 1.14.13.39 0.773
3q9a H4BNitric oxide synthase, brain 1.14.13.39 0.773
3ufp H4BNitric oxide synthase, brain 1.14.13.39 0.771
3nlj H4BNitric oxide synthase, brain 1.14.13.39 0.757
1om5 H4BNitric oxide synthase, brain 1.14.13.39 0.756
4e5i 0N9Polymerase acidic protein / 0.744
2g6i HBINitric oxide synthase, brain 1.14.13.39 0.723
2y37 H4BNitric oxide synthase, inducible 1.14.13.39 0.708
3e7i H4BNitric oxide synthase, inducible 1.14.13.39 0.697
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.691
1qw5 H4BNitric oxide synthase, inducible 1.14.13.39 0.673
3fc5 H4BNitric oxide synthase, brain 1.14.13.39 0.673
1dwx H4BNitric oxide synthase, inducible 1.14.13.39 0.668
1m8i H4BNitric oxide synthase, inducible 1.14.13.39 0.666
3e6o H4BNitric oxide synthase, inducible 1.14.13.39 0.662
1vaf H4BNitric oxide synthase, inducible 1.14.13.39 0.660
4e5f 0N7Polymerase acidic protein / 0.660
1r35 H4BNitric oxide synthase, inducible 1.14.13.39 0.657
4k5f H4BNitric oxide synthase, brain 1.14.13.39 0.656