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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3n5v H4B Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3n5v H4BNitric oxide synthase, brain 1.14.13.39 0.890
3ufr H4BNitric oxide synthase, brain 1.14.13.39 0.840
4jsi H4BNitric oxide synthase, brain 1.14.13.39 0.840
3n5y H4BNitric oxide synthase, brain 1.14.13.39 0.832
3jx5 H4BNitric oxide synthase, brain 1.14.13.39 0.831
4imw H4BNitric oxide synthase, brain 1.14.13.39 0.830
4imt H4BNitric oxide synthase, brain 1.14.13.39 0.827
3nln H4BNitric oxide synthase, brain 1.14.13.39 0.825
3jwt H4BNitric oxide synthase, brain 1.14.13.39 0.821
3jwv H4BNitric oxide synthase, brain 1.14.13.39 0.820
3nlv H4BNitric oxide synthase, brain 1.14.13.39 0.817
4jsh H4BNitric oxide synthase, brain 1.14.13.39 0.813
3ufq H4BNitric oxide synthase, brain 1.14.13.39 0.809
3n61 H4BNitric oxide synthase, brain 1.14.13.39 0.808
3jx3 H4BNitric oxide synthase, brain 1.14.13.39 0.807
3jx2 H4BNitric oxide synthase, brain 1.14.13.39 0.806
3dqr H4BNitric oxide synthase, brain 1.14.13.39 0.805
3jwu H4BNitric oxide synthase, brain 1.14.13.39 0.805
4cx4 H4BNitric oxide synthase, brain 1.14.13.39 0.803
1m00 H4BNitric oxide synthase, brain 1.14.13.39 0.802
1zzq H4BNitric oxide synthase, brain 1.14.13.39 0.802
3ufu H4BNitric oxide synthase, brain 1.14.13.39 0.802
3nlp H4BNitric oxide synthase, brain 1.14.13.39 0.801
3tyl H4BNitric oxide synthase, brain 1.14.13.39 0.800
4fvx H4BNitric oxide synthase, brain 1.14.13.39 0.800
4jsg H4BNitric oxide synthase, brain 1.14.13.39 0.800
3b3n H4BNitric oxide synthase, brain 1.14.13.39 0.799
3jt6 H4BNitric oxide synthase, brain 1.14.13.39 0.799
3rqm H4BNitric oxide synthase, brain 1.14.13.39 0.798
3rqj H4BNitric oxide synthase, brain 1.14.13.39 0.795
3jt7 H4BNitric oxide synthase, brain 1.14.13.39 0.794
3jt9 H4BNitric oxide synthase, brain 1.14.13.39 0.794
3jx4 H4BNitric oxide synthase, brain 1.14.13.39 0.791
3rqk H4BNitric oxide synthase, brain 1.14.13.39 0.791
4k5d H4BNitric oxide synthase, brain 1.14.13.39 0.790
3hsn H4BNitric oxide synthase, brain 1.14.13.39 0.788
4fvz H4BNitric oxide synthase, brain 1.14.13.39 0.788
3n5z H4BNitric oxide synthase, brain 1.14.13.39 0.787
2hx4 H4BNitric oxide synthase, brain 1.14.13.39 0.786
3ufo H4BNitric oxide synthase, brain 1.14.13.39 0.786
4cx3 H4BNitric oxide synthase, brain 1.14.13.39 0.786
4cx5 H4BNitric oxide synthase, brain 1.14.13.39 0.786
3pne H4BNitric oxide synthase, brain 1.14.13.39 0.785
4fw0 H4BNitric oxide synthase, brain 1.14.13.39 0.785
1p6k H4BNitric oxide synthase, brain 1.14.13.39 0.784
2hx3 H4BNitric oxide synthase, brain 1.14.13.39 0.784
3b3o H4BNitric oxide synthase, brain 1.14.13.39 0.784
3nlr H4BNitric oxide synthase, brain 1.14.13.39 0.784
4k5f H4BNitric oxide synthase, brain 1.14.13.39 0.784
5agk H4BNitric oxide synthase, brain 1.14.13.39 0.784
1zzr H4BNitric oxide synthase, brain 1.14.13.39 0.783
1zzu H4BNitric oxide synthase, brain 1.14.13.39 0.783
3nlz H4BNitric oxide synthase, brain 1.14.13.39 0.783
3tym H4BNitric oxide synthase, brain 1.14.13.39 0.782
3nly H4BNitric oxide synthase, brain 1.14.13.39 0.781
3nnz H4BNitric oxide synthase, brain 1.14.13.39 0.781
3png H4BNitric oxide synthase, brain 1.14.13.39 0.781
3jt5 H4BNitric oxide synthase, brain 1.14.13.39 0.780
3nlq H4BNitric oxide synthase, brain 1.14.13.39 0.779
3rql H4BNitric oxide synthase, brain 1.14.13.39 0.779
3pnf H4BNitric oxide synthase, brain 1.14.13.39 0.778
3b3m H4BNitric oxide synthase, brain 1.14.13.39 0.777
3b3p H4BNitric oxide synthase, brain 1.14.13.39 0.776
3jt8 H4BNitric oxide synthase, brain 1.14.13.39 0.773
3jx6 H4BNitric oxide synthase, brain 1.14.13.39 0.773
4imu H4BNitric oxide synthase, brain 1.14.13.39 0.773
3jta H4BNitric oxide synthase, brain 1.14.13.39 0.771
4k5g H4BNitric oxide synthase, brain 1.14.13.39 0.769
1rs7 H4BNitric oxide synthase, brain 1.14.13.39 0.768
4jsf H4BNitric oxide synthase, brain 1.14.13.39 0.767
1p6j H4BNitric oxide synthase, brain 1.14.13.39 0.764
4eux H4BNitric oxide synthase, brain 1.14.13.39 0.764
4fvy H4BNitric oxide synthase, brain 1.14.13.39 0.764
1rs6 H4BNitric oxide synthase, brain 1.14.13.39 0.760
3jt4 H4BNitric oxide synthase, brain 1.14.13.39 0.759
4d1o H4BNitric oxide synthase, endothelial 1.14.13.39 0.756
3q99 H4BNitric oxide synthase, brain 1.14.13.39 0.754
1k2t H4BNitric oxide synthase, brain 1.14.13.39 0.753
3ufv H4BNitric oxide synthase, brain 1.14.13.39 0.753
1zvl H4BNitric oxide synthase, brain 1.14.13.39 0.752
3q9a H4BNitric oxide synthase, brain 1.14.13.39 0.751
3nlk H4BNitric oxide synthase, brain 1.14.13.39 0.748
3nlj H4BNitric oxide synthase, brain 1.14.13.39 0.746
1k2s H4BNitric oxide synthase, brain 1.14.13.39 0.745
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1k2u H4BNitric oxide synthase, brain 1.14.13.39 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4lux H4BNitric oxide synthase, brain 1.14.13.39 0.744
3jt3 H4BNitric oxide synthase, brain 1.14.13.39 0.743
3nlo H4BNitric oxide synthase, brain 1.14.13.39 0.743
3nny H4BNitric oxide synthase, brain 1.14.13.39 0.743
3ufs H4BNitric oxide synthase, brain 1.14.13.39 0.743
5agp H4BNitric oxide synthase, brain 1.14.13.39 0.743
3svp H4BNitric oxide synthase, brain 1.14.13.39 0.741
1mmv H4BNitric oxide synthase, brain 1.14.13.39 0.739
3svq H4BNitric oxide synthase, brain 1.14.13.39 0.739
5agl H4BNitric oxide synthase, brain 1.14.13.39 0.737
3fc5 H4BNitric oxide synthase, brain 1.14.13.39 0.736
3nlw H4BNitric oxide synthase, brain 1.14.13.39 0.729
3uft H4BNitric oxide synthase, brain 1.14.13.39 0.722
3ufp H4BNitric oxide synthase, brain 1.14.13.39 0.721
3ufw H4BNitric oxide synthase, brain 1.14.13.39 0.721
4jse H4BNitric oxide synthase, brain 1.14.13.39 0.721
4gqe H4BNitric oxide synthase, brain 1.14.13.39 0.720
4k5e H4BNitric oxide synthase, brain 1.14.13.39 0.718
3nos H4BNitric oxide synthase, endothelial 1.14.13.39 0.717
1om5 H4BNitric oxide synthase, brain 1.14.13.39 0.714
2g6i HBINitric oxide synthase, brain 1.14.13.39 0.682
3ej8 H4BNitric oxide synthase, inducible 1.14.13.39 0.668
3e7i H4BNitric oxide synthase, inducible 1.14.13.39 0.654