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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3n14 FMN Xenobiotic reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3n14 FMNXenobiotic reductase / 1.196
3l5l FMNXenobiotic reductase / 1.185
4uth FMNXenobiotic reductase / 1.170
2h8x FMNXenA / 1.167
4utm FNRXenobiotic reductase / 1.167
3l67 FMNXenobiotic reductase / 1.165
5cpm FNRNADH:flavin oxidoreductase / 1.149
4utk FNRXenobiotic reductase / 1.113
3n19 FNRXenobiotic reductase / 1.074
4utl FNRXenobiotic reductase / 1.058
1z48 FMNNADPH dehydrogenase / 1.034
2gou FMNNADH:flavin oxidoreductase Sye1 / 1.024
2gqa FMNNADH:flavin oxidoreductase Sye1 / 1.003
1z44 FMNNADPH dehydrogenase / 1.001
3tjl FMNNADPH dehydrogenase / 1.001
4m5p FMNNADPH dehydrogenase / 1.001
1oya FMNNADPH dehydrogenase 1 1.6.99.1 0.987
4df2 FMNNADPH dehydrogenase / 0.981
1z41 FMNNADPH dehydrogenase / 0.969
1oyc FMNNADPH dehydrogenase 1 1.6.99.1 0.968
3kru FMNNADH:flavin oxidoreductase/NADH oxidase / 0.947
3gr8 FMNNADPH dehydrogenase / 0.946
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.935
2hs8 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.932
1gwj FMNMorphinone reductase / 0.920
1icq FMN12-oxophytodienoate reductase 1 1.3.1.42 0.919
3hf3 FMNChromate reductase / 0.917
4yco FMNtRNA-dihydrouridine(16) synthase / 0.915
3hgr FMN12-oxophytodienoate reductase 1 1.3.1.42 0.914
4qnw FMNChanoclavine-I aldehyde reductase easA / 0.912
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.911
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.906
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.905
4ycp FMNtRNA-dihydrouridine(16) synthase / 0.903
1ics FMN12-oxophytodienoate reductase 1 1.3.1.42 0.893
4jic FMNGTN Reductase / 0.889
4tmc FMNOld yellow enzyme / 0.887
4h6k FMNNADPH dehydrogenase 1 1.6.99.1 0.877
1bwk FMNNADPH dehydrogenase 1 1.6.99.1 0.863
1h50 FMNPentaerythritol tetranitrate reductase / 0.863
2zfa FMNLactate oxidase / 0.861
4b5n FMNNAD(P)H:flavin oxidoreductase Sye4 / 0.856
3p67 FMNPentaerythritol tetranitrate reductase / 0.848
1vhn FMNtRNA-dihydrouridine synthase / 0.845
3aty FMNProstaglandin F2a synthase / 0.843
3f03 FMNPentaerythritol tetranitrate reductase / 0.842
3p84 FMNPentaerythritol tetranitrate reductase / 0.839
3p8j FMNPentaerythritol tetranitrate reductase / 0.839
2nli FMNLactate oxidase / 0.838
2abb FMNPentaerythritol tetranitrate reductase / 0.834
1vyr FMNPentaerythritol tetranitrate reductase / 0.830
2j6x FMNLactate oxidase / 0.830
3p8i FMNPentaerythritol tetranitrate reductase / 0.830
4bf9 FMNtRNA-dihydrouridine(16) synthase / 0.829
4ef9 FMNDihydroorotate dehydrogenase (fumarate) / 0.819
2djx FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.816
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.815
1vji FMN12-oxophytodienoate reductase 1 1.3.1.42 0.814
4qai FMNNADPH dehydrogenase / 0.814
4k7y FMNNADPH dehydrogenase 1 1.6.99.1 0.809
1jue FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.808
2djl FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.805
4rnx FMNNADPH dehydrogenase 1 1.6.99.1 0.804
1h51 FMNPentaerythritol tetranitrate reductase / 0.803
4a3u FMNNADH:flavin oxidoreductase/NADH oxidase / 0.802
3p74 FMNPentaerythritol tetranitrate reductase / 0.796
1jub FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.792
3gka FMNN-ethylmaleimide reductase / 0.788
1djq FMNTrimethylamine dehydrogenase 1.5.8.2 0.785
3p62 FMNPentaerythritol tetranitrate reductase / 0.783
4xq6 FMNDihydroorotate dehydrogenase (quinone) / 0.779
3giy FMN(S)-mandelate dehydrogenase 1.1.99.31 0.778
4rnv FMNNADPH dehydrogenase 1 1.6.99.1 0.771
4awt FMNNADH:flavin oxidoreductase Sye1 / 0.767
2bsl FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.766
2du2 FMNLactate oxidase / 0.749
2q3r FMN12-oxophytodienoate reductase 1 1.3.1.42 0.749
4iql FMNEnoyl-(Acyl-carrier-protein) reductase II / 0.749
1h7w FMNDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.747
1ofd FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.746
1kbi FMNCytochrome b2, mitochondrial 1.1.2.3 0.740
3p82 FMNPentaerythritol tetranitrate reductase / 0.740
4yl2 FMNLactate oxidase / 0.740
1dor FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.739
3b04 OOPIsopentenyl-diphosphate delta-isomerase / 0.735
2z6i FMN2-nitropropane dioxygenase / 0.734
1ep3 FMNDihydroorotate dehydrogenase B (NAD(+)), catalytic subunit 1.3.1.14 0.733
3oix FMNDihydroorotate dehydrogenase / 0.726
1k02 FMNNADPH dehydrogenase 1 1.6.99.1 0.723
5ebu FMNLactate oxidase / 0.723
4cw5 FMNDfnA / 0.718
4rje FNRLactate oxidase / 0.718
1kbj FMNCytochrome b2, mitochondrial 1.1.2.3 0.717
1vcf FMNIsopentenyl-diphosphate delta-isomerase / 0.713
2e77 FMNLactate oxidase / 0.712
1ep1 FMNDihydroorotate dehydrogenase B (NAD(+)), catalytic subunit 1.3.1.14 0.705
4yx6 FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.704
4rnu FMNNADPH dehydrogenase 1 1.6.99.1 0.703
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.700
4tmb FMNOld yellow enzyme / 0.677
2q3o FMN12-oxophytodienoate reductase 3 1.3.1.42 0.676
1q45 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.672
3c3n FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.668
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.663
3qe2 FMNNADPH--cytochrome P450 reductase / 0.663
2gjn FMNNitronate monooxygenase 1.13.12.16 0.660
3bw2 FMNPutative 2-nitropropane dioxygenase / 0.660
1szg FNSCytochrome b2, mitochondrial 1.1.2.3 0.657
4wzh FMNDihydroorotate dehydrogenase (fumarate) / 0.657
1tj0 FADBifunctional protein PutA 1.5.5.2 0.656
4nmc FADBifunctional protein PutA / 0.656
5j3w FMNSensory box protein / 0.656
1siq FADGlutaryl-CoA dehydrogenase, mitochondrial 1.3.8.6 0.655
1iqr FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.654
1mb4 NDPAspartate-semialdehyde dehydrogenase 1 / 0.653
3fst FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.651
2oz0 FMNCytochrome b2, mitochondrial 1.1.2.3 0.650