Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3n0b FAD Flavin-dependent thymidylate synthase 2.1.1.148

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3n0b FADFlavin-dependent thymidylate synthase 2.1.1.148 1.361
3g4a FADFlavin-dependent thymidylate synthase 2.1.1.148 1.201
5ios FADFlavin-dependent thymidylate synthase 2.1.1.148 1.181
3n0c FADFlavin-dependent thymidylate synthase 2.1.1.148 1.175
1o29 FADFlavin-dependent thymidylate synthase 2.1.1.148 1.093
4gte FADFlavin-dependent thymidylate synthase 2.1.1.148 0.994
4gtl FADFlavin-dependent thymidylate synthase 2.1.1.148 0.954
4p5a FADFlavin-dependent thymidylate synthase / 0.925
4p5b FADFlavin-dependent thymidylate synthase / 0.844
4kar FADFlavin-dependent thymidylate synthase 2.1.1.148 0.835
2af6 FADFlavin-dependent thymidylate synthase 2.1.1.148 0.815
1kq4 FADFlavin-dependent thymidylate synthase 2.1.1.148 0.813
3gwc FADFlavin-dependent thymidylate synthase 2.1.1.148 0.789
3hzg FADFlavin-dependent thymidylate synthase 2.1.1.148 0.751
3ah5 FADFlavin-dependent thymidylate synthase 2.1.1.148 0.700
2gq2 NAPFlavin-dependent thymidylate synthase 2.1.1.148 0.680
3enk UPGUDP-glucose 4-epimerase / 0.677
1sdw IYTPeptidyl-glycine alpha-amidating monooxygenase 1.14.17.3 0.653
3q6j KPC2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.651
4ubs DIFPentalenic acid synthase 1.14.15.11 0.651