Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3mvz BHN Nickel-binding periplasmic protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3mvz BHNNickel-binding periplasmic protein / 1.162
3mvy BHZNickel-binding periplasmic protein / 1.066
3mw0 BHRNickel-binding periplasmic protein / 0.867
3mzb BHRNickel-binding periplasmic protein / 0.818
3mz9 BHNNickel-binding periplasmic protein / 0.754
3mvw BHZNickel-binding periplasmic protein / 0.718
2y6p CTP3-deoxy-manno-octulosonate cytidylyltransferase 2.7.7.38 0.671
3q6j KPC2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.657
1u4s BIHL-lactate dehydrogenase 1.1.1.27 0.653