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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3mvy BHZ Nickel-binding periplasmic protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3mvy BHZNickel-binding periplasmic protein / 1.128
3mvz BHNNickel-binding periplasmic protein / 1.066
3mz9 BHNNickel-binding periplasmic protein / 0.835
3mw0 BHRNickel-binding periplasmic protein / 0.834
3mzb BHRNickel-binding periplasmic protein / 0.811
3mvw BHZNickel-binding periplasmic protein / 0.716
2y6p CTP3-deoxy-manno-octulosonate cytidylyltransferase 2.7.7.38 0.679
4cd2 FOLDihydrofolate reductase 1.5.1.3 0.659
4dwb 0M7Farnesyl pyrophosphate synthase / 0.657