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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3mtl FEF Cyclin-dependent kinase 16 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3mtl FEFCyclin-dependent kinase 16 2.7.11.22 1.051
1ke8 LS4Cyclin-dependent kinase 2 2.7.11.22 0.771
4fks 46KCyclin-dependent kinase 2 2.7.11.22 0.755
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4fkt 48KCyclin-dependent kinase 2 2.7.11.22 0.743
4fkp LS5Cyclin-dependent kinase 2 2.7.11.22 0.731
4fx3 60KCyclin-dependent kinase 2 2.7.11.22 0.731
1ke5 LS1Cyclin-dependent kinase 2 2.7.11.22 0.720
1ke6 LS2Cyclin-dependent kinase 2 2.7.11.22 0.719
1ke7 LS3Cyclin-dependent kinase 2 2.7.11.22 0.708
4fkw 62KCyclin-dependent kinase 2 2.7.11.22 0.708
3eb0 DRKUncharacterized protein / 0.703
1ke9 LS5Cyclin-dependent kinase 2 2.7.11.22 0.686
1e9h INRCyclin-dependent kinase 2 2.7.11.22 0.685
4fkq 42KCyclin-dependent kinase 2 2.7.11.22 0.683
2qkr IXMCdc2-like CDK2/CDC28 like protein kinase / 0.673
3ggf GVDSerine/threonine-protein kinase 26 / 0.664
4fsn A58Serine/threonine-protein kinase Chk1 2.7.11.1 0.663
1v0o INRCell division control protein 2 homolog 2.7.11.22 0.662
4e5f 0N7Polymerase acidic protein / 0.660
1fvt 106Cyclin-dependent kinase 2 2.7.11.22 0.656
4fsm HK1Serine/threonine-protein kinase Chk1 2.7.11.1 0.650