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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3mno DEX Glucocorticoid receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3mno DEXGlucocorticoid receptor / 1.149
3mnp DEXGlucocorticoid receptor / 1.106
3mne DEXGlucocorticoid receptor / 0.957
1m2z DEXGlucocorticoid receptor / 0.825
2a3i C0RMineralocorticoid receptor / 0.796
4p6x HCYGlucocorticoid receptor / 0.784
4udc DEXGlucocorticoid receptor / 0.777
1sr7 MOFProgesterone receptor / 0.748
4p6w MOFGlucocorticoid receptor / 0.733
2abi 1CAMineralocorticoid receptor / 0.710
1y9r 1CAMineralocorticoid receptor / 0.708
3bqd DAYGlucocorticoid receptor / 0.708
2aa6 STRMineralocorticoid receptor / 0.691
1p93 DEXGlucocorticoid receptor / 0.671
3vhu SNLMineralocorticoid receptor / 0.671
1h61 PDNPentaerythritol tetranitrate reductase / 0.665
2aa5 STRMineralocorticoid receptor / 0.661
2b01 TUDPhospholipase A2, major isoenzyme 3.1.1.4 0.652