sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3mne | DEX | Glucocorticoid receptor |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3mne | DEX | Glucocorticoid receptor | / | 1.188 | |
| 4udc | DEX | Glucocorticoid receptor | / | 1.023 | |
| 3mnp | DEX | Glucocorticoid receptor | / | 0.959 | |
| 3mno | DEX | Glucocorticoid receptor | / | 0.957 | |
| 1p93 | DEX | Glucocorticoid receptor | / | 0.797 | |
| 4p6x | HCY | Glucocorticoid receptor | / | 0.780 | |
| 2a3i | C0R | Mineralocorticoid receptor | / | 0.778 | |
| 2aa7 | 1CA | Mineralocorticoid receptor | / | 0.771 | |
| 4p6w | MOF | Glucocorticoid receptor | / | 0.769 | |
| 2aa2 | AS4 | Mineralocorticoid receptor | / | 0.753 | |
| 2abi | 1CA | Mineralocorticoid receptor | / | 0.748 | |
| 2ab2 | SNL | Mineralocorticoid receptor | / | 0.730 | |
| 3vhu | SNL | Mineralocorticoid receptor | / | 0.716 | |
| 1m2z | DEX | Glucocorticoid receptor | / | 0.715 | |
| 2aa6 | STR | Mineralocorticoid receptor | / | 0.713 | |
| 1sr7 | MOF | Progesterone receptor | / | 0.686 | |
| 4uda | DEX | Mineralocorticoid receptor | / | 0.684 | |
| 1gs4 | ZK5 | Androgen receptor | / | 0.680 | |
| 1y9r | 1CA | Mineralocorticoid receptor | / | 0.674 | |
| 3w5p | 4OA | Vitamin D3 receptor | / | 0.673 | |
| 2qd4 | CHD | Ferrochelatase, mitochondrial | 4.99.1.1 | 0.672 | |
| 2aba | STR | Pentaerythritol tetranitrate reductase | / | 0.671 | |
| 2w8y | NDR | Progesterone receptor | / | 0.670 | |
| 2aax | PDN | Mineralocorticoid receptor | / | 0.669 | |
| 4l1x | STR | Aldo-keto reductase family 1 member C2 | / | 0.662 | |
| 3tc5 | 3T5 | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 | 5.2.1.8 | 0.660 | |
| 1kdm | DHT | Sex hormone-binding globulin | / | 0.655 | |
| 2ylp | TES | Androgen receptor | / | 0.655 | |
| 1h61 | PDN | Pentaerythritol tetranitrate reductase | / | 0.652 | |
| 1t79 | DHT | Androgen receptor | / | 0.652 |