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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3mf5 HJZ Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3mf5 HJZGenome polyprotein 2.7.7.48 1.089
2gir NN3Genome polyprotein 2.7.7.48 0.970
4eo8 0S3Genome polyprotein 2.7.7.48 0.849
4ju6 1O6Genome polyprotein 2.7.7.48 0.846
4ju7 1O6Genome polyprotein 2.7.7.48 0.846
2d3u CCTPolyprotein / 0.825
4jvq 1MLGenome polyprotein 2.7.7.48 0.773
4j0a 1JLGenome polyprotein 2.7.7.48 0.726
4jju 1MBGenome polyprotein 2.7.7.48 0.709
2hwh RNAGenome polyprotein 2.7.7.48 0.703
4jtz 1NWGenome polyprotein 2.7.7.48 0.700
4ju3 1O1Genome polyprotein 2.7.7.48 0.697
2o5d VR1Genome polyprotein 2.7.7.48 0.681
4ju1 1NZGenome polyprotein 2.7.7.48 0.664