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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3mdz EZL Carbonic anhydrase 7 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3mdz EZLCarbonic anhydrase 7 4.2.1.1 0.881
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.792
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.758
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.757
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.757
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.755
4uov AZMCarbonate dehydratase / 0.755
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.751
4xiw AZMCarbonic anhydrase, alpha type / 0.751
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.746
3dcc D9ZCarbonic anhydrase 2 4.2.1.1 0.746
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.746
4kap 1QVCarbonic anhydrase 2 4.2.1.1 0.740
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.738
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.737
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.737
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.732
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.729
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.728
4dz7 D02Carbonic anhydrase 2 4.2.1.1 0.728
3mhc ARZCarbonic anhydrase 2 4.2.1.1 0.727
3d9z D9ZCarbonic anhydrase 2 4.2.1.1 0.726
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.724
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.721
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.717
3qyk IE2Carbonic anhydrase 2 4.2.1.1 0.715
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.713
3mho J43Carbonic anhydrase 2 4.2.1.1 0.713
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.713
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.712
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.711
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.710
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.710
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.709
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.709
1bzm MZMCarbonic anhydrase 1 4.2.1.1 0.708
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.707
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.707
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.707
4ilx 1EZCarbonic anhydrase 2 4.2.1.1 0.707
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.705
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.705
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.704
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.703
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.703
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.702
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.702
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.702
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.701
1i9q IOFCarbonic anhydrase 2 4.2.1.1 0.697
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.697
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.696
3s8x E59Carbonic anhydrase 2 4.2.1.1 0.696
1bnn AL1Carbonic anhydrase 2 4.2.1.1 0.691
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.690
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.689
3daz MZMCarbonic anhydrase 2 4.2.1.1 0.687
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.684
1xpz 4TZCarbonic anhydrase 2 4.2.1.1 0.681
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.680
2x7t WZBCarbonic anhydrase 2 4.2.1.1 0.679
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.679
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.677
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.675
1i9p IOECarbonic anhydrase 2 4.2.1.1 0.674
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.673
1bn3 AL6Carbonic anhydrase 2 4.2.1.1 0.672
1if5 FBTCarbonic anhydrase 2 4.2.1.1 0.672
3m98 E02Carbonic anhydrase 2 4.2.1.1 0.668
2nmx M25Carbonic anhydrase 1 4.2.1.1 0.667
3n4b WWZCarbonic anhydrase 2 4.2.1.1 0.666
3oik WZBCarbonic anhydrase 2 4.2.1.1 0.666
3s9t E49Carbonic anhydrase 2 4.2.1.1 0.665
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.663
1cny EG3Carbonic anhydrase 2 4.2.1.1 0.661
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.661
2pow I7CCarbonic anhydrase 2 4.2.1.1 0.659
1cnw EG1Carbonic anhydrase 2 4.2.1.1 0.657
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.657
4ht2 V50Carbonic anhydrase 12 4.2.1.1 0.657
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.656
4hu1 V13Carbonic anhydrase 13 4.2.1.1 0.656
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.654
3m96 E38Carbonic anhydrase 2 4.2.1.1 0.654
1i90 INMCarbonic anhydrase 2 4.2.1.1 0.650