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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3mb6 01I Casein kinase II subunit alpha 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3mb6 01ICasein kinase II subunit alpha 2.7.11.1 0.941
3r04 UNQSerine/threonine-protein kinase pim-1 2.7.11.1 0.729
3mb7 14ICasein kinase II subunit alpha 2.7.11.1 0.721
3ma3 01ISerine/threonine-protein kinase pim-1 2.7.11.1 0.705
3r0t FU9Casein kinase II subunit alpha 2.7.11.1 0.682
3owk 18ECasein kinase II subunit alpha 2.7.11.1 0.665
3r02 UNMSerine/threonine-protein kinase pim-1 2.7.11.1 0.662
3pe2 E1BCasein kinase II subunit alpha 2.7.11.1 0.657
2xiz XIZSerine/threonine-protein kinase pim-1 2.7.11.1 0.653
2b0m 201Dihydroorotate dehydrogenase (quinone), mitochondrial 1.3.5.2 0.652