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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ma3 01I Serine/threonine-protein kinase pim-1 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ma3 01ISerine/threonine-protein kinase pim-1 2.7.11.1 0.990
3mb6 01ICasein kinase II subunit alpha 2.7.11.1 0.705
2obj VRVSerine/threonine-protein kinase pim-1 2.7.11.1 0.698
3umx Q18Serine/threonine-protein kinase pim-1 2.7.11.1 0.693
1pmv 537Mitogen-activated protein kinase 10 2.7.11.24 0.685
2xj1 XJ1Serine/threonine-protein kinase pim-1 2.7.11.1 0.677
4f9c 0SXCell division cycle 7-related protein kinase 2.7.11.1 0.674
4a7c E46Serine/threonine-protein kinase pim-1 2.7.11.1 0.671
2xiz XIZSerine/threonine-protein kinase pim-1 2.7.11.1 0.668
3jy0 LYGSerine/threonine-protein kinase pim-1 2.7.11.1 0.668
4k18 1OBSerine/threonine-protein kinase pim-1 2.7.11.1 0.668
2xj2 985Serine/threonine-protein kinase pim-1 2.7.11.1 0.667
3qzg X67Cyclin-dependent kinase 2 2.7.11.22 0.662
3fz1 B98Cyclin-dependent kinase 2 2.7.11.22 0.661
2ye9 2D4Heat shock protein HSP 90-alpha / 0.659
3bgq VX2Serine/threonine-protein kinase pim-1 2.7.11.1 0.658
4cf7 ADPAdenylate kinase / 0.656
1rek B8LcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.654
2c1b CQPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.654
4a86 2ANMajor pollen allergen Bet v 1-A / 0.653
2c1a I5ScAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.650
2c3i IYZSerine/threonine-protein kinase pim-1 2.7.11.1 0.650