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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3m96 E38 Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3m96 E38Carbonic anhydrase 2 4.2.1.1 1.012
3sax E50Carbonic anhydrase 2 4.2.1.1 0.912
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.893
3myq E27Carbonic anhydrase 2 4.2.1.1 0.850
3s9t E49Carbonic anhydrase 2 4.2.1.1 0.826
3m98 E02Carbonic anhydrase 2 4.2.1.1 0.804
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.790
4kni E1ECarbonic anhydrase 2 4.2.1.1 0.788
3l14 I7BCarbonic anhydrase 2 4.2.1.1 0.785
4knj E1FCarbonic anhydrase 2 4.2.1.1 0.758
4knm E1ECarbonic anhydrase 13 4.2.1.1 0.742
2weh FB1Carbonic anhydrase 2 4.2.1.1 0.737
3mho J43Carbonic anhydrase 2 4.2.1.1 0.733
4knn E1FCarbonic anhydrase 13 4.2.1.1 0.729
4itp 1GDCarbonic anhydrase 2 4.2.1.1 0.720
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.719
3s8x E59Carbonic anhydrase 2 4.2.1.1 0.717
1xq0 4TRCarbonic anhydrase 2 4.2.1.1 0.716
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.713
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.713
3m5e JDRCarbonic anhydrase 2 4.2.1.1 0.712
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.711
3po6 DT9Carbonic anhydrase 2 4.2.1.1 0.711
4dz7 D02Carbonic anhydrase 2 4.2.1.1 0.701
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.699
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.698
3bl1 BL1Carbonic anhydrase 2 4.2.1.1 0.698
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.698
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.697
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.689
3bet CTFCarbonic anhydrase 2 4.2.1.1 0.686
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.684
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.681
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.681
1if5 FBTCarbonic anhydrase 2 4.2.1.1 0.678
1i90 INMCarbonic anhydrase 2 4.2.1.1 0.675
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.674
1cnw EG1Carbonic anhydrase 2 4.2.1.1 0.671
3f7b AG5Carbonic anhydrase 4 4.2.1.1 0.670
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.669
3f7u AG4Carbonic anhydrase 4 4.2.1.1 0.668
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.667
2x7t WZBCarbonic anhydrase 2 4.2.1.1 0.666
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.663
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.663
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.662
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.662
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.661
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.660
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.657
1okm SABCarbonic anhydrase 2 4.2.1.1 0.656
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.655
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.654
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.654
3mdz EZLCarbonic anhydrase 7 4.2.1.1 0.654
3dcc D9ZCarbonic anhydrase 2 4.2.1.1 0.651
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.651
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.651