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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3m5e JDR Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3m5e JDRCarbonic anhydrase 2 4.2.1.1 1.031
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.817
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.789
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.786
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.782
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.781
1i9q IOFCarbonic anhydrase 2 4.2.1.1 0.780
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.779
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.775
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.775
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.767
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.766
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.765
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.763
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.760
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.747
1i9p IOECarbonic anhydrase 2 4.2.1.1 0.743
3qyk IE2Carbonic anhydrase 2 4.2.1.1 0.743
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.741
1cnx EG2Carbonic anhydrase 2 4.2.1.1 0.735
3myq E27Carbonic anhydrase 2 4.2.1.1 0.729
1cny EG3Carbonic anhydrase 2 4.2.1.1 0.727
3dd8 2C7Carbonic anhydrase 2 4.2.1.1 0.726
3s9t E49Carbonic anhydrase 2 4.2.1.1 0.726
1okn STBCarbonic anhydrase 2 4.2.1.1 0.719
3eft 3BSCarbonic anhydrase 2 4.2.1.1 0.719
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.719
3m96 E38Carbonic anhydrase 2 4.2.1.1 0.712
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.711
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.711
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.707
2x7t WZBCarbonic anhydrase 2 4.2.1.1 0.706
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.705
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.704
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.703
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.702
1g54 FFBCarbonic anhydrase 2 4.2.1.1 0.701
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.701
1if5 FBTCarbonic anhydrase 2 4.2.1.1 0.700
3mhc ARZCarbonic anhydrase 2 4.2.1.1 0.697
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.693
4uov AZMCarbonate dehydratase / 0.692
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.691
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.691
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.690
4bf1 9FKCarbonic anhydrase 2 4.2.1.1 0.690
1a42 BZUCarbonic anhydrase 2 4.2.1.1 0.687
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.685
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.685
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.685
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.681
1cnw EG1Carbonic anhydrase 2 4.2.1.1 0.680
4xiw AZMCarbonic anhydrase, alpha type / 0.680
3oik WZBCarbonic anhydrase 2 4.2.1.1 0.679
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.678
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.677
3dcc D9ZCarbonic anhydrase 2 4.2.1.1 0.677
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.676
3d9z D9ZCarbonic anhydrase 2 4.2.1.1 0.676
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.676
1xpz 4TZCarbonic anhydrase 2 4.2.1.1 0.674
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.673
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.672
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.672
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.671
3m98 E02Carbonic anhydrase 2 4.2.1.1 0.665
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.659
2weh FB1Carbonic anhydrase 2 4.2.1.1 0.657
4kp5 E1FCarbonic anhydrase 12 4.2.1.1 0.656
3da2 4MDCarbonic anhydrase 13 4.2.1.1 0.655
1bn4 AL9Carbonic anhydrase 2 4.2.1.1 0.652
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.652