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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3m2y BE0 Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3m2y BE0Carbonic anhydrase 2 4.2.1.1 0.841
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
2weh FB1Carbonic anhydrase 2 4.2.1.1 0.736
4kp5 E1FCarbonic anhydrase 12 4.2.1.1 0.730
4itp 1GDCarbonic anhydrase 2 4.2.1.1 0.721
3s8x E59Carbonic anhydrase 2 4.2.1.1 0.715
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.712
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.710
1okm SABCarbonic anhydrase 2 4.2.1.1 0.707
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.706
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.700
3eft 3BSCarbonic anhydrase 2 4.2.1.1 0.699
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.698
2nmx M25Carbonic anhydrase 1 4.2.1.1 0.695
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.694
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.693
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.693
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.692
3n2p AYXCarbonic anhydrase 2 4.2.1.1 0.692
3qyk IE2Carbonic anhydrase 2 4.2.1.1 0.692
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.691
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.690
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.690
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.690
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.689
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.688
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.685
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.682
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.682
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.682
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.682
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.680
3m98 E02Carbonic anhydrase 2 4.2.1.1 0.680
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.680
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.680
2eu3 FF3Carbonic anhydrase 2 4.2.1.1 0.679
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.679
1xpz 4TZCarbonic anhydrase 2 4.2.1.1 0.678
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.678
4dz7 D02Carbonic anhydrase 2 4.2.1.1 0.678
4uov AZMCarbonate dehydratase / 0.678
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.677
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.677
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.675
1if6 FBUCarbonic anhydrase 2 4.2.1.1 0.674
1cnw EG1Carbonic anhydrase 2 4.2.1.1 0.671
4xiw AZMCarbonic anhydrase, alpha type / 0.671
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.670
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.669
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.669
1i9q IOFCarbonic anhydrase 2 4.2.1.1 0.668
2nn7 M29Carbonic anhydrase 1 4.2.1.1 0.668
4knj E1FCarbonic anhydrase 2 4.2.1.1 0.668
1if5 FBTCarbonic anhydrase 2 4.2.1.1 0.667
3sax E50Carbonic anhydrase 2 4.2.1.1 0.667
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.666
1i9p IOECarbonic anhydrase 2 4.2.1.1 0.666
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.666
3hku TORCarbonic anhydrase 2 4.2.1.1 0.666
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.666
1okn STBCarbonic anhydrase 2 4.2.1.1 0.665
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.665
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.664
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.663
3po6 DT9Carbonic anhydrase 2 4.2.1.1 0.662
3mho J43Carbonic anhydrase 2 4.2.1.1 0.659
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.658
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.656
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.656
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.656
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.655
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.654
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.654
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.652
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.652
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.650
4knm E1ECarbonic anhydrase 13 4.2.1.1 0.650