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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3m2n J74 Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.859
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.826
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.813
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.810
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.808
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.789
3mho J43Carbonic anhydrase 2 4.2.1.1 0.784
3qyk IE2Carbonic anhydrase 2 4.2.1.1 0.784
3m5e JDRCarbonic anhydrase 2 4.2.1.1 0.775
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.770
1if5 FBTCarbonic anhydrase 2 4.2.1.1 0.767
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.767
1okm SABCarbonic anhydrase 2 4.2.1.1 0.765
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.764
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.764
3s8x E59Carbonic anhydrase 2 4.2.1.1 0.764
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.760
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.759
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.756
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.754
1if6 FBUCarbonic anhydrase 2 4.2.1.1 0.753
4itp 1GDCarbonic anhydrase 2 4.2.1.1 0.745
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.740
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.738
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.738
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.738
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.734
4dz7 D02Carbonic anhydrase 2 4.2.1.1 0.733
4kap 1QVCarbonic anhydrase 2 4.2.1.1 0.733
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.731
4uov AZMCarbonate dehydratase / 0.731
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.727
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.725
3s9t E49Carbonic anhydrase 2 4.2.1.1 0.725
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.724
1okn STBCarbonic anhydrase 2 4.2.1.1 0.723
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.719
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.718
4xiw AZMCarbonic anhydrase, alpha type / 0.718
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.717
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.717
4ht2 V50Carbonic anhydrase 12 4.2.1.1 0.716
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.715
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.715
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.715
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.714
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.713
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.713
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.712
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.712
1cny EG3Carbonic anhydrase 2 4.2.1.1 0.711
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.710
3mdz EZLCarbonic anhydrase 7 4.2.1.1 0.709
3n2p AYXCarbonic anhydrase 2 4.2.1.1 0.708
1i9q IOFCarbonic anhydrase 2 4.2.1.1 0.707
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.707
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.707
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.701
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.699
2nmx M25Carbonic anhydrase 1 4.2.1.1 0.699
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.698
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.694
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.691
3mhc ARZCarbonic anhydrase 2 4.2.1.1 0.690
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.687
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.687
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.686
3m98 E02Carbonic anhydrase 2 4.2.1.1 0.684
1g54 FFBCarbonic anhydrase 2 4.2.1.1 0.683
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.683
3d9z D9ZCarbonic anhydrase 2 4.2.1.1 0.681
3dcc D9ZCarbonic anhydrase 2 4.2.1.1 0.681
2x7t WZBCarbonic anhydrase 2 4.2.1.1 0.680
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.678
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.676
3m2y BE0Carbonic anhydrase 2 4.2.1.1 0.675
1xpz 4TZCarbonic anhydrase 2 4.2.1.1 0.673
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.672
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.672
1bn3 AL6Carbonic anhydrase 2 4.2.1.1 0.671
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.668
3eft 3BSCarbonic anhydrase 2 4.2.1.1 0.667
3igp DT7Carbonic anhydrase 2 4.2.1.1 0.667
3bl1 BL1Carbonic anhydrase 2 4.2.1.1 0.666
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.665
2pow I7CCarbonic anhydrase 2 4.2.1.1 0.662
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.660
3daz MZMCarbonic anhydrase 2 4.2.1.1 0.660
4knm E1ECarbonic anhydrase 13 4.2.1.1 0.660
2eu3 FF3Carbonic anhydrase 2 4.2.1.1 0.659
4knn E1FCarbonic anhydrase 13 4.2.1.1 0.656
3da2 4MDCarbonic anhydrase 13 4.2.1.1 0.655
2weh FB1Carbonic anhydrase 2 4.2.1.1 0.653