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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3lv1 NAP NAD(P)-dependent benzaldehyde dehydrogenase 1.2.1.28

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3lv1 NAPNAD(P)-dependent benzaldehyde dehydrogenase 1.2.1.28 1.157
3lns NAPNAD(P)-dependent benzaldehyde dehydrogenase 1.2.1.28 0.933
3b4w NADAldehyde dehydrogenase family protein / 0.842
4i8p NADAminoaldehyde dehydrogenase 1 / 0.841
3rhl NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.782
1o04 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.773
4a0m NADBetaine aldehyde dehydrogenase, chloroplastic 1.2.1.8 0.767
3rhr NDPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.765
3v9l NADDelta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial 1.2.1.88 0.759
1uxn NAPNAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase / 0.758
2eii NAD1-pyrroline-5-carboxylate dehydrogenase / 0.758
2euh NAPNADP-dependent glyceraldehyde-3-phosphate dehydrogenase 1.2.1.9 0.758
4pz2 NADAldehyde dehydrogenase 2-6 / 0.754
3rhq NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.751
1uxr NAPNAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase / 0.750
3efv NADPutative succinate-semialdehyde dehydrogenase / 0.750
1a4z NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.746
1uxp NAPNAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase / 0.746
1o9j NADAldehyde dehydrogenase, cytosolic 1 1.2.1.3 0.740
4gnz NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.736
1t90 NADMalonate-semialdehyde dehydrogenase 1.2.1.27 0.733
4i1w NAD2-aminomuconate 6-semialdehyde dehydrogenase / 0.731
4v37 NADBetaine aldehyde dehydrogenase, chloroplastic 1.2.1.8 0.729
4pxn NADAldehyde dehydrogenase family 7 member B4 / 0.728
2d4e NAD5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenaseiheyensis HTE831] / 0.727
4i8q NADPutative betaine aldehyde dehyrogenase / 0.723
4ihi NADProbable pyrroline-5-carboxylate dehydrogenase RocA / 0.723
2jg7 NADAntiquitin / 0.722
2id2 NAPNADP-dependent glyceraldehyde-3-phosphate dehydrogenase 1.2.1.9 0.718
2j6l NAIAlpha-aminoadipic semialdehyde dehydrogenase 1.2.1.31 0.718
2o2q NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.717
2ehq NAP1-pyrroline-5-carboxylate dehydrogenase / 0.711
1bpw NADBetaine aldehyde dehydrogenase 1.2.1.8 0.708
1uxv NAPNAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase / 0.702
3rhj NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.702
1ky8 NAPNAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase / 0.690
1uxt NADNAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase / 0.669
1uxu NAPNAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase / 0.666
3ju8 NADN-succinylglutamate 5-semialdehyde dehydrogenase 1.2.1.71 0.666
4zz7 NADMethylmalonate-semialdehyde dehydrogenase / 0.666
2qe0 NAPNADP-dependent glyceraldehyde-3-phosphate dehydrogenase 1.2.1.9 0.663
2j40 NAD1-pyrroline-5-carboxylate dehydrogenase / 0.658
1qi1 NAPNADP-dependent glyceraldehyde-3-phosphate dehydrogenase 1.2.1.9 0.657
4oe2 NAD2-aminomuconate 6-semialdehyde dehydrogenase / 0.656
2bhp NAD1-pyrroline-5-carboxylate dehydrogenase / 0.655
2y5d NAP3,4-dehydroadipyl-CoA semialdehyde dehydrogenase / 0.652
4jdc NADProbable pyrroline-5-carboxylate dehydrogenase RocA / 0.652