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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3lut NAP Voltage-gated potassium channel subunit beta-2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3lut NAPVoltage-gated potassium channel subunit beta-2 / 1.470
2r9r NAPVoltage-gated potassium channel subunit beta-2 / 1.067
4jta NAPVoltage-gated potassium channel subunit beta-2 / 1.054
3lnm NAPVoltage-gated potassium channel subunit beta-2 / 1.047
4jtd NAPVoltage-gated potassium channel subunit beta-2 / 1.025
4jtc NAPVoltage-gated potassium channel subunit beta-2 / 0.939
1lqa NDPProtein tas / 0.932
1qrq NDPVoltage-gated potassium channel subunit beta-2 / 0.884
2clp NDPAflatoxin B1 aldehyde reductase member 3 / 0.805
1gve NAPAflatoxin B1 aldehyde reductase member 3 1 0.784
2bp1 NDPAflatoxin B1 aldehyde reductase member 2 / 0.776
1a80 NDP2,5-diketo-D-gluconic acid reductase A 1.1.1.346 0.744
2hej NDPAldo-keto reductase family 1 member C21 1.1.1 0.744
4aub NAPL-glyceraldehyde 3-phosphate reductase 1.1.1 0.744
2c91 NAPAflatoxin B1 aldehyde reductase member 2 / 0.735
3caq NDP3-oxo-5-beta-steroid 4-dehydrogenase / 0.727
2hdj NDPAldo-keto reductase family 1 member C2 / 0.723
1q5m NDPProstaglandin-E(2) 9-reductase 1.1.1.189 0.715
1m9h NAD2,5-diketo-D-gluconic acid reductase A 1.1.1.346 0.713
2p5n NDPAldo-keto reductase family 1 member C21 1.1.1 0.707
1og6 NAPOxidoreductase YdhF 1 0.696
2fvl NAPAldo-keto reductase family 1 member C4 1.1.1.225 0.689
2vdg NDPAldose reductase 1.1.1.21 0.677
4g5d NDPProstaglandin F synthase 1.1.1.188 0.677
1lwi NAP3-alpha-hydroxysteroid dehydrogenase 1.1.1.50 0.673
1pz1 NAPGeneral stress protein 69 / 0.670
1k8c NAPNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.666
1mi3 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.665
4jtq NAPAldo-keto reductase family 1 member C2 / 0.661
4xzn NAPAldo-keto reductase family 1 member B10 1.1.1 0.659
2b1i 93ABifunctional purine biosynthesis protein PURH 2.1.2.3 0.658
2acu NAPAldose reductase 1.1.1.21 0.652
3b6p TMPThree-prime repair exonuclease 1 3.1.11.2 0.651