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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3lqs PSZ D-alanine aminotransferase 2.6.1.21

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3lqs PSZD-alanine aminotransferase 2.6.1.21 1.093
2daa DCSD-alanine aminotransferase 2.6.1.21 0.874
3daa PDDD-alanine aminotransferase 2.6.1.21 0.864
4uug PXGBranched-chain amino acid aminotransferase, putative / 0.819
4cmf PXGUncharacterized protein / 0.815
1daa PLPD-alanine aminotransferase 2.6.1.21 0.792
2ej2 PPEBranched-chain amino acid aminotransferase (IlvE) / 0.775
1kt8 ILPBranched-chain-amino-acid aminotransferase, mitochondrial 2.6.1.42 0.711
2abj PLPBranched-chain-amino-acid aminotransferase, cytosolic 2.6.1.42 0.679
4fl0 PLPAminotransferase ALD1, chloroplastic 2.6.1 0.657