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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3lnv 1ZZ Saframycin Mx1 synthetase B

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3lnv 1ZZSaframycin Mx1 synthetase B / 1.257
3kxw 1ZZSaframycin Mx1 synthetase B / 1.020
2d1t SLULuciferin 4-monooxygenase 1.13.12.7 0.675
4r1l ADPPhenylacetate-coenzyme A ligase / 0.661
4fw3 L52UDP-3-O-acyl-N-acetylglucosamine deacetylase / 0.657
1i5r HYCEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.651