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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3lmh ADP Myosin heavy chain kinase A 2.7.11.7

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3lmh ADPMyosin heavy chain kinase A 2.7.11.7 1.009
3lla ACPMyosin heavy chain kinase A 2.7.11.7 0.874
5e9e ANPMyosin heavy chain kinase A 2.7.11.7 0.848
3lmi ATPMyosin heavy chain kinase A 2.7.11.7 0.795
4zs4 ATPMyosin heavy chain kinase A 2.7.11.7 0.792
4zme ADNMyosin heavy chain kinase A 2.7.11.7 0.753
4c5b ADPD-alanine--D-alanine ligase B 6.3.2.4 0.717
2zdg ADPD-alanine--D-alanine ligase / 0.702
3akk ADPSerine/threonine-protein kinase CtkA 2.7.11.1 0.698
1ia9 ANPTransient receptor potential cation channel subfamily M member 7 2.7.11.1 0.696
3k5h ATPPhosphoribosyl-aminoimidazole carboxylase / 0.693
4h3q ANPMitogen-activated protein kinase 1 2.7.11.24 0.693
4ffm ADPUncharacterized protein / 0.689
3eps ATPIsocitrate dehydrogenase kinase/phosphatase / 0.685
2pml ANPUncharacterized protein / 0.684
2pyw ADPMethylthioribose kinase 2.7.1.100 0.683
5cvf ATPCasein kinase II subunit alpha 2.7.11.1 0.683
3pdt ADPMyosin heavy chain kinase A 2.7.11.7 0.681
3akl ANPSerine/threonine-protein kinase CtkA 2.7.11.1 0.680
4iwx ADPRibosomal protein S6--L-glutamate ligase / 0.679
3t9e ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.677
2vqd AP2Biotin carboxylase 6.3.4.14 0.673
3t99 ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.673
3t9f ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.673
4mv3 ACPBiotin carboxylase 6.3.4.14 0.673
3q1k ADPD-alanine--D-alanine ligase A 6.3.2.4 0.670
4oa9 ANPProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 0.670
3cvu FADRE11660p / 0.669
3rv4 ADPBiotin carboxylase 6.3.4.14 0.669
4ffl ADPUncharacterized protein / 0.669
4ux9 ANPMitogen-activated protein kinase 8 2.7.11.24 0.669
4x6r ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.669
2r7n ADP5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase / 0.668
5e92 ANPTGF-beta receptor type-2 2.7.11.30 0.667
1m0w ANPGlutathione synthetase 6.3.2.3 0.666
1px2 ATPSynapsin-1 / 0.665
1z2p ACPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.665
3cvy FADRE11660p / 0.663
3g8c ADPBiotin carboxylase 6.3.4.14 0.662
4nzo ANPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.662
2p0a ANPSynapsin-3 / 0.661
4bfm ANPMaternal embryonic leucine zipper kinase 2.7.11.1 0.660
3llt ANPProtein serine/threonine kinase-1 / 0.657
3tdw GDPGentamicin resistance protein / 0.656
4ffr ATPUncharacterized protein / 0.655
5iqi GNPBifunctional AAC/APH 2.3.1 0.655
4rx6 ATPNitrogen regulatory PII-like protein / 0.653
4xw5 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.652
5iqd GNPBifunctional AAC/APH 2.3.1 0.652
2wq7 FADRE11660p / 0.651
4qpm ADPMitotic checkpoint serine/threonine-protein kinase BUB1 2.7.11.1 0.651
5c1p ADPD-alanine--D-alanine ligase / 0.651
3t9d ANPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.650
4q4c ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.650