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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ljg EEF Macrophage metalloelastase 3.4.24.65

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ljg EEFMacrophage metalloelastase 3.4.24.65 1.033
3lik EEGMacrophage metalloelastase 3.4.24.65 0.833
3tsk QEGMacrophage metalloelastase 3.4.24.65 0.787
4gr3 R45Macrophage metalloelastase 3.4.24.65 0.776
1c8t TR1Stromelysin-1 3.4.24.17 0.766
2hu6 37AMacrophage metalloelastase 3.4.24.65 0.760
3lil EEAMacrophage metalloelastase 3.4.24.65 0.730
4gr0 R4BMacrophage metalloelastase 3.4.24.65 0.719
4gr8 R4CMacrophage metalloelastase 3.4.24.65 0.681
4gql R47Macrophage metalloelastase 3.4.24.65 0.673
1sln INHStromelysin-1 3.4.24.17 0.669
4i03 L88Macrophage metalloelastase 3.4.24.65 0.656
1hv5 RXPStromelysin-3 3.4.24 0.651