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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3lix E17 Protease

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3lix E17Protease / 1.369
3liv E16Protease / 1.110
3lin E13Protease / 1.096
3liq E14Protease / 1.064
3lit E15Protease / 1.012
1hpx KNIGag-Pol polyprotein / 0.785
3oxx DR7Gag-Pol polyprotein 3.4.23.16 0.771
2fxe DR7Gag-Pol polyprotein 3.4.23.16 0.738
3gga GGWGag-Pol polyprotein / 0.736
1hvj A78Gag-Pol polyprotein / 0.723
3fx5 KNIGag-Pol polyprotein 3.4.23.16 0.720
3eky DR7Gag-Pol polyprotein 3.4.23.16 0.718
3el1 DR7Gag-Pol polyprotein 3.4.23.16 0.716
1dif A85Gag-Pol polyprotein / 0.715
4k4p 3TLGag-Pol polyprotein / 0.715
1hxb ROCGag-Pol polyprotein 3.4.23.16 0.711
2p3a 3TLPol protein / 0.711
2fxd DR7Pol polyprotein / 0.708
1b11 3TLPol polyprotein / 0.706
2pk6 O33V-1 protease / 0.706
1msn JE2Gag-Pol polyprotein 3.4.23.16 0.703
3kfn 3TLGag-Pol polyprotein / 0.702
1hih C20Gag-Pol polyprotein / 0.701
1msm JE2Gag-Pol polyprotein 3.4.23.16 0.696
1vik BAYGag-Pol polyprotein / 0.696
2r5q 1UNGag-Pol polyprotein / 0.696
1odw 0E8Gag-Pol polyprotein 3.4.23.16 0.695
3ekx 1UNGag-Pol polyprotein 3.4.23.16 0.694
3s85 LK0Gag-Pol polyprotein / 0.692
2pk5 075Protease / 0.691
3kdd JZQGag-Pol polyprotein 3.4.23.16 0.691
1hvs A77Gag-Pol polyprotein / 0.689
2q5k AB1Protease / 0.689
3kdc JZPGag-Pol polyprotein 3.4.23.16 0.689
3ndu ROCGag-Pol polyprotein 3.4.23.16 0.688
2p3b 3TLV-1 PROTEASE protein / 0.685
2p3b 3TLV-1 protease / 0.685
3kfp 3TLGag-Pol polyprotein / 0.685
2cem 2AHPol protein / 0.684
3ndw RITGag-Pol polyprotein 3.4.23.16 0.684
3kf0 3TLGag-Pol polyprotein / 0.680
1vij BAYGag-Pol polyprotein / 0.678
2rkg AB1Pol protein / 0.674
3dcr KVSProtease / 0.671
2a1e IPFGag-Pol polyprotein 3.4.23.16 0.670
1kzk JE2Gag-Pol polyprotein 3.4.23.16 0.669
1hsg MK1Gag-Pol polyprotein / 0.668
2uy0 HV1Gag-Pol polyprotein 3.4.23.16 0.668
1hiv 1ZKGag-Pol polyprotein / 0.666
2az8 3TLGag-Pol polyprotein 3.4.23.16 0.666
3el9 DR7Gag-Pol polyprotein 3.4.23.16 0.666
3em4 DR7Gag-Pol polyprotein 3.4.23.16 0.666
1mrw K57Gag-Pol polyprotein 3.4.23.16 0.665
1t7j 478Gag-Pol polyprotein 3.4.23.16 0.665
2nnp ROCProtease / 0.665
2cej 1AHPol protein / 0.664
3ndx RITGag-Pol polyprotein 3.4.23.16 0.664
2b60 RITPol polyprotein / 0.662
1xl5 190Gag-Pol polyprotein 3.4.23.16 0.661
2rkf AB1Pol protein / 0.660
2q54 MU1Protease / 0.658
3tlh 3TLGag-Pol polyprotein 3.4.23.16 0.658
3d1y ROCGag-Pol polyprotein 3.4.23.16 0.656
3ggx GGXGag-Pol polyprotein / 0.656
3tof 076Gag-Pol polyprotein 2.7.7.49 0.654
4qgi ROCGag-Pol polyprotein 3.4.23.16 0.654
1mtr PI6Gag-Pol polyprotein 3.4.23.16 0.653
2i4v DJRV-1 protease / 0.653
2i4w KGQProtease / 0.653
3nls 016Gag-Pol polyprotein 3.4.23.16 0.653
3tog 079Gag-Pol polyprotein 2.7.7.49 0.653
1hxw RITGag-Pol polyprotein / 0.650