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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3lik EEG Macrophage metalloelastase 3.4.24.65

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3lik EEGMacrophage metalloelastase 3.4.24.65 1.050
3tsk QEGMacrophage metalloelastase 3.4.24.65 0.846
3ljg EEFMacrophage metalloelastase 3.4.24.65 0.833
3lil EEAMacrophage metalloelastase 3.4.24.65 0.754
2hu6 37AMacrophage metalloelastase 3.4.24.65 0.731
4gr0 R4BMacrophage metalloelastase 3.4.24.65 0.723
2oy2 ILE_ALA_GLYNeutrophil collagenase 3.4.24.34 0.698
4i03 L88Macrophage metalloelastase 3.4.24.65 0.691
3ts4 EEGMacrophage metalloelastase 3.4.24.65 0.679
2ovz 5MRMatrix metalloproteinase-9 3.4.24.35 0.677
4gr3 R45Macrophage metalloelastase 3.4.24.65 0.672
4guy KLJMacrophage metalloelastase 3.4.24.65 0.672
1c8t TR1Stromelysin-1 3.4.24.17 0.671
2oxw ILE_ALA_GLYMacrophage metalloelastase 3.4.24.65 0.666
4gr8 R4CMacrophage metalloelastase 3.4.24.65 0.666
2wo8 077Macrophage metalloelastase 3.4.24.65 0.660
2woa 576Macrophage metalloelastase 3.4.24.65 0.655
1jk3 BATMacrophage metalloelastase 3.4.24.65 0.654