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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3lgx ATP D-alanine--poly(phosphoribitol) ligase subunit 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3lgx ATPD-alanine--poly(phosphoribitol) ligase subunit 1 / 1.024
4oxi GAPEnterobactin synthetase component F-related protein / 0.736
3ies M24Luciferin 4-monooxygenase 1.13.12.7 0.734
5ifi PRXAcetyl-coenzyme A synthetase / 0.718
3fce ATPD-alanine--poly(phosphoribitol) ligase subunit 1 / 0.713
1pg3 PRXAcetyl-coenzyme A synthetase / 0.691
2p2b PRXAcetyl-coenzyme A synthetase / 0.689
3kxw 1ZZSaframycin Mx1 synthetase B / 0.684
3fcc ATPD-alanine--poly(phosphoribitol) ligase subunit 1 / 0.678
4g36 SLULuciferin 4-monooxygenase 1.13.12.7 0.677
4g37 SLULuciferin 4-monooxygenase 1.13.12.7 0.675
3gpc COAAcyl-coenzyme A synthetase ACSM2A, mitochondrial 6.2.1.2 0.672
2d1t SLULuciferin 4-monooxygenase 1.13.12.7 0.669
2d1s SLULuciferin 4-monooxygenase 1.13.12.7 0.665
2p2j PRXAcetyl-coenzyme A synthetase / 0.663
2p2m PRXAcetyl-coenzyme A synthetase / 0.663
2p2q PRXAcetyl-coenzyme A synthetase / 0.658